View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8278_low_2 (Length: 365)
Name: NF8278_low_2
Description: NF8278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8278_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 29058422 - 29058769
Alignment:
| Q |
1 |
agcaaaagatcttctttccataatacagattggtgaggagatttgaaaacttctggacttgcaatacacatacctggatactttgtcatcaacgtgtaaa |
100 |
Q |
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| T |
29058422 |
agcaaaagatcttctttccataatacagattggtgaggagatttgaaaacttctggacttgcaatacacatacctggatactttgtcatcaacgcgtaaa |
29058521 |
T |
|
| Q |
101 |
caggaaccgcgtgtctataaacatcttgttttccacctgcatgagctattttaacaacaaagtcctttgatttggaactgaattgaggatccttgtatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29058522 |
caggaaccgcgtgtctataaacatcttgttttccacctgcatgagctattttaacaacaaagtcctttgatttggaactgaattgaggatccttgtatcc |
29058621 |
T |
|
| Q |
201 |
cttgatgtttcctttcttcttactttttgagtcttcgttattagtattctctacgaaacctaacgagtgaacgacgcgtttcagcatagcctgcaattca |
300 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29058622 |
cttgatgtttcctttcttcttactttttgagtctttgttatcagtgttctctacgaaacctaacgagtgaacgacgcgtttcagcatagcctgcaattca |
29058721 |
T |
|
| Q |
301 |
aagttatacaatctagatgtttcatcatattctatcattaggtgatgt |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29058722 |
aagttatacaatctagatgtttcatcatattctatcataaggtgatgt |
29058769 |
T |
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