View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8278_low_3 (Length: 344)
Name: NF8278_low_3
Description: NF8278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8278_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 34822366 - 34822694
Alignment:
| Q |
1 |
cttgaatatttgttaattatgaacatttgaagtgtaggacttgatggtgttgtgtctgtatttcctgatgaaaagagacaactccttaccacaagatctt |
100 |
Q |
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| T |
34822366 |
cttgaatatttgttaattatgaacatttgaagtgtaggacttgatggtgttgtgtctgtatttcctgatgaaaagagacaactccttac-acaagatctt |
34822464 |
T |
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| Q |
101 |
gggactttataggatttcctgaatacgtggagagagtaca--atgaatgtgatgccataattggaatcattgattctggaatttggccggaatcagaaag |
198 |
Q |
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| T |
34822465 |
gggactttataggatttcctgaatacttggagagagaacacaatgaatgtgatgtcataactggaatcattgattctggaatttggccggaatcagaaag |
34822564 |
T |
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| Q |
199 |
tttcaacgataaaggatatagtccaccaccaagcaaatggaagggcatttgccaagcttctgatttcacctgtaacaagtaatatgcttcgacttcttat |
298 |
Q |
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| T |
34822565 |
tttcaacgataaagaatatagtccaccaccaagcaaatggaagggcatttgccaagcttctgatttcgcctgtaacaagtaatatgcttcgacttcttat |
34822664 |
T |
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| Q |
299 |
aaatgaatattcctatagttggacaaaggt |
328 |
Q |
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| T |
34822665 |
acatgaatattcctatagttggacaaaggt |
34822694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 280
Target Start/End: Complemental strand, 34712583 - 34712334
Alignment:
| Q |
33 |
tgtaggacttgatggtgttgtgtctgtatttcctgatgaaaagagacaactccttaccacaagatcttgggactttataggatttcctgaatacgtggag |
132 |
Q |
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| T |
34712583 |
tgtagaacttgatggggtggtgtccatctttcctgataaaaagagatctctacttacaacaaagtcatgggacttcataggctttccacaatatgtggag |
34712484 |
T |
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| Q |
133 |
ag--agtacaatgaatgtgatgccataattggaatcattgattctggaatttggccggaatcagaaagtttcaacgataaaggatatagtccaccaccaa |
230 |
Q |
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| T |
34712483 |
aggaaatactatgaataagatgtaattattggagtgatcgatactgggatctggccagaatctaatagtttcaacgatgaagggtttagtccacctccaa |
34712384 |
T |
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| Q |
231 |
gcaaatggaagggcatttgccaagcttctgatttcacctgtaacaagtaa |
280 |
Q |
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| T |
34712383 |
gtaaatggaagggaatttgccagacttacaatttcacctgcaacaagtaa |
34712334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 27973024 - 27972929
Alignment:
| Q |
167 |
attgattctggaatttggccggaatcagaaagtttcaacgataaaggatatagtccaccaccaagcaaatggaagggcatttgccaagcttctgat |
262 |
Q |
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| T |
27973024 |
attgattctggaatttggccagagtccgaaagtttcaacgataaaggtttcagtccaccaccatccaaatggaagggcacgtgccagacttctgat |
27972929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 38839252 - 38839175
Alignment:
| Q |
33 |
tgtaggacttgatggtgttgtgtctgtatttcctgatgaaaagagacaactccttaccacaagatcttgggactttat |
110 |
Q |
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| T |
38839252 |
tgtagaacatgatggagtggtgtttgtctttcccaatgaaaaaagacagctccttaccacaagatcgtgggattttat |
38839175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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