View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8278_low_7 (Length: 205)
Name: NF8278_low_7
Description: NF8278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8278_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 24 - 202
Target Start/End: Original strand, 15349319 - 15349497
Alignment:
| Q |
24 |
atccaactctgtacttttaccctttgtgccgtacaaatagtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggca |
123 |
Q |
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| T |
15349319 |
atccaactctgtacttttaccctttgtgccgtacaaagagtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggca |
15349418 |
T |
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| Q |
124 |
gttgttagagcgttccccccattgggagagtttatggggtgttagatcccaagtggctatgtatacagagtctctgctt |
202 |
Q |
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| T |
15349419 |
gttgttagagcgttccccccattgggagagtttatggggtgttagatcccaagtggctatgtatacagagtctctgctt |
15349497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 4030375 - 4030303
Alignment:
| Q |
62 |
agtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagagc |
134 |
Q |
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| T |
4030375 |
agtggtgatattattggaacatatggtggtactgaattggtgaagtatgatgacaaaggacagttgctagagc |
4030303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 48871009 - 48871109
Alignment:
| Q |
37 |
cttttaccctttgtgccgtacaaatagtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagagcgt |
136 |
Q |
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| T |
48871009 |
cttttccccattgtgctgtacaaaaagtggtgatattattggagcacatagtggtattggattggtgaagtatgatgacaatggacagttgttagggcgt |
48871108 |
T |
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| Q |
137 |
t |
137 |
Q |
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| T |
48871109 |
t |
48871109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 48876313 - 48876413
Alignment:
| Q |
37 |
cttttaccctttgtgccgtacaaatagtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagagcgt |
136 |
Q |
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||||| ||| |||||| ||||||| |||||||||||||||||| | || |||| ||| |||||||||||||||||||||||| |||||||||| |||| |
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| T |
48876313 |
cttttccccattgtgctgtacaaaaagtggtgatattattggagcacatagtggtattggattggtgaagtatgatgacaatggacagttgttagggcgt |
48876412 |
T |
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| Q |
137 |
t |
137 |
Q |
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| T |
48876413 |
t |
48876413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 48886695 - 48886795
Alignment:
| Q |
37 |
cttttaccctttgtgccgtacaaatagtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagagcgt |
136 |
Q |
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| T |
48886695 |
cttttccccattgtgctgtacaaaaagtggtgatattattggagcacatagtggtattggattggtgaagtatgatgacaatggacagttgttagggcgt |
48886794 |
T |
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| Q |
137 |
t |
137 |
Q |
| |
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| T |
48886795 |
t |
48886795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 48899185 - 48899284
Alignment:
| Q |
33 |
tgtacttttaccctttgtgccgtacaaatagtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttaga |
132 |
Q |
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||||||||||||| |||||| ||||||| ||||| |||||||||||| | ||| || ||| |||||||||||||||||||||||| |||||||||| |
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| T |
48899185 |
tgtacttttacccattgtgctgtacaaaaagtggctatattattggaacagatggtgaatttggattggtgaagtatgatgacaatggagagttgttaga |
48899284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 11015085 - 11015007
Alignment:
| Q |
55 |
tacaaatagtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagag |
133 |
Q |
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|||||| ||||||| ||||||||||| ||||| ||||| ||||||||| |||||||||| |||||| |||||| ||||| |
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| T |
11015085 |
tacaaaaagtggtggtattattggaacaaatggtggtggtgaattggtaaagtatgatggcaatggtcagttgctagag |
11015007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 11005514 - 11005444
Alignment:
| Q |
63 |
gtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagag |
133 |
Q |
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| T |
11005514 |
gtggtcatattattgggacaaatggtggtactggattggtgaagtatgatggcaatggtcagttgctagag |
11005444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 29350897 - 29350968
Alignment:
| Q |
63 |
gtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgggcagttgttagagc |
134 |
Q |
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|||||||||||||||||| ||| |||| |||||||||||||||| ||||||| || |||||| |||||| |
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| T |
29350897 |
gtggtgatattattggaacggatggtggtactgaattggtgaagtattatgacaaaggacagttgctagagc |
29350968 |
T |
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