View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8279_high_2 (Length: 429)
Name: NF8279_high_2
Description: NF8279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8279_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 161 - 420
Target Start/End: Complemental strand, 55269018 - 55268761
Alignment:
| Q |
161 |
tacatactataaatcattcatttaatccatttataattgaagttgaactaataactcccacttattttagttcaagtgtgagtgagtaattaaacggatt |
260 |
Q |
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| T |
55269018 |
tacatactataaatcattcatttaatccatttataattgaagttgaactaataactcccacttattttagttcaagtgtgagtgagtaattaaacggatt |
55268919 |
T |
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| Q |
261 |
aaaaacaacattggaggtactatgcaaattccaaacaacacctaaggatgtcaacggggtcgatgggggtactcctctgctccgtagatggggttgcata |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
55268918 |
aaaaacaacattggaggtactatgcaaattccaaacaacacctaaggatgtcaacggggtcgatgggggtactcctctgcttcttagatggggttgcata |
55268819 |
T |
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| Q |
361 |
ctctctaggagtgcgttcctcaaccatatcgtttttgtttttgtgtgtgtttcttcttct |
420 |
Q |
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| T |
55268818 |
ctctctaggagtgcgttcctcagccatatcgtttttgtttttgt--gtgtttcttcttct |
55268761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 55269193 - 55269054
Alignment:
| Q |
22 |
atgttaatctactactattattaatcttttgatttatgatctgtcacatagtgagtttcttttagcaatggaaccacatctcatccaaatttggaggaat |
121 |
Q |
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| T |
55269193 |
atgttaatctactactattattaatcttttgatttatgatctgtcacatattgagtttcttttagcaatggaaccacatctcatcccaatttggaggaat |
55269094 |
T |
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| Q |
122 |
gagacgaaagcaaccataatccattacttctattttatat |
161 |
Q |
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| T |
55269093 |
gagacgaaagcaaccataatccattacttctattttatat |
55269054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 55262493 - 55262349
Alignment:
| Q |
22 |
atgttaatctactactattattaatcttttgatttatgatctgtcacatagtgagtttcttttagcaatggaaccacatct-----catccaaatttgga |
116 |
Q |
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| T |
55262493 |
atgttaatctactactattattaatattttgatttatgatcagtcacatagtgagtttcttttagcaatggaaccacatctcatctcatcccaatttgaa |
55262394 |
T |
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| Q |
117 |
ggaatgagacgaaagcaaccataatccattacttctattttatat |
161 |
Q |
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| T |
55262393 |
gaaatgagatgaaagcatccataatctattatttatattttatat |
55262349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 345 - 420
Target Start/End: Complemental strand, 29952612 - 29952537
Alignment:
| Q |
345 |
tagatggggttgcatactctctaggagtgcgttcctcaaccatatcgtttttgtttttgtgtgtgtttcttcttct |
420 |
Q |
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| T |
29952612 |
tagatggggttgcatactctctaagagtgtgttcctcagctatatcgtttctgtttttgtgtgtgtttcttcttct |
29952537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 420
Target Start/End: Original strand, 25592353 - 25592429
Alignment:
| Q |
344 |
gtagatggggttgcatactctctaggagtgcgttcctcaaccatatcgtttttgtttttgtgtgtgtttcttcttct |
420 |
Q |
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| T |
25592353 |
gtagatggggcggcatactctctaagagtgtattcctcagccatatcgtttctattattgcatgcgtttcttcttct |
25592429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 393
Target Start/End: Complemental strand, 25950348 - 25950296
Alignment:
| Q |
341 |
tccgtagatggggttgcatactctctaggagtgcgttcctcaaccatatcgtt |
393 |
Q |
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| T |
25950348 |
tccgtagaaggggttgcatactctttaagagtgcgttcctcagtcatatcgtt |
25950296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 25785490 - 25785530
Alignment:
| Q |
341 |
tccgtagatggggttgcatactctctaggagtgcgttcctc |
381 |
Q |
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| T |
25785490 |
tccgtagatgggattgcatactctttaagagtgcgttcctc |
25785530 |
T |
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