View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8279_high_8 (Length: 255)
Name: NF8279_high_8
Description: NF8279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8279_high_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 7447137 - 7447393
Alignment:
| Q |
11 |
tttggtgttgataacggatatgatgatcacgtatttttcatggctaatgaaacatgttactacaatggcatggaatggataagtttgtact--------- |
101 |
Q |
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| T |
7447137 |
tttggtgttgataacggatatgatgacgacgtatttttcatgcccaatgaaacatgttactacaatggcatggaatggataagtttgtacatgtagaaga |
7447236 |
T |
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| Q |
102 |
------aattaagaatatattagtaataataatattgcatttgtacataatgtgaatgatcccaatatgtaaattaattgtttgctattagctagtgtgt |
195 |
Q |
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| T |
7447237 |
aaaaaaaaaaaagaatatattagtaataata---tagcatttgtacataatgtgaatgatcccaatatgtaaattaattgtttgctactagctagtgtgt |
7447333 |
T |
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| Q |
196 |
ttatttaactatgatttgggaacatatatatccattaacataatgattttcattttgact |
255 |
Q |
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| T |
7447334 |
ttatttaactatgatttgggaacatatatatccattaacataatgattttcattttgact |
7447393 |
T |
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