View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8279_low_1 (Length: 445)
Name: NF8279_low_1
Description: NF8279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8279_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 27 - 427
Target Start/End: Original strand, 6968710 - 6969110
Alignment:
| Q |
27 |
aaatcacatgtgattatgagagataagagttgtgaaaaactagttacaaatatcatttctctttctctttcgtctcgtgctattcagcattgctattcta |
126 |
Q |
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| T |
6968710 |
aaatcacatatgagtatgagagac--gagttgtcaaaaactggttacaaatatcatttctctttctctttcgtctcgtactattcagcattgctattcta |
6968807 |
T |
|
| Q |
127 |
aatatatgtaagt--ttatattcaaataccattgacattacatattcacacaggactaaagttcttcgtaaggtaaactaattttgcctgcacttttcat |
224 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968808 |
aatatatgtaagtgtttatattcaaataccattgacattacatattcacacaggactaaagttcttcgtaaggtaaactaattttgcctgcacttttcat |
6968907 |
T |
|
| Q |
225 |
catcgtcatgttccagtatcaccaatatttagttgttttttaacaatataaacttgaaaccagcacaaaaactgaggtattttttaatgtcctccatttt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968908 |
catcgtcatgttccagtatcaccaatatttagttgttttttaacaatataaacttgaaaccagcacaaaaactgaggtattttttaatgtcctccatttt |
6969007 |
T |
|
| Q |
325 |
caaactgaaaccagcaaaagctgtttcgttttgcatacacacacaaacacaaatcagtaaaaccattttgcaagagttaaagtccccaactcatcaaacc |
424 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6969008 |
caaactgaaaccagcaaaagctgtttcgttttgcatacacacagaaacacaaatcagtaaaaccattttgcaagagttaaagtccccaactcatcaaacc |
6969107 |
T |
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| Q |
425 |
ctt |
427 |
Q |
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||| |
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| T |
6969108 |
ctt |
6969110 |
T |
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