View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8279_low_12 (Length: 239)
Name: NF8279_low_12
Description: NF8279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8279_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 10887969 - 10887749
Alignment:
| Q |
4 |
ttcattacgatgatgatgaagacgaagttgtcgacatttctgcaaaattgaccggaggagtcgtgccaaagaagctacctatgttaccaccaccgaaaat |
103 |
Q |
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| T |
10887969 |
ttcattacgatgatgatgaagacgaagtagtcgacaattctgcaaaacccaccggaggagttgtgccgaagaagctacctatgttaacaccaccgaagat |
10887870 |
T |
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| Q |
104 |
atctgaccagaaagttatgtccatggaagacgaagaggttgtcggtgcagtggtatcgggatcaattccgtcttactcccttgagtcaaagctcggagat |
203 |
Q |
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| T |
10887869 |
atctgaccaaaaagttatgtccatggaagacgaagaggttgtcggtgcagtggtatcgggatcaattccttcttactcccttgagtcgaagctcggagat |
10887770 |
T |
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| Q |
204 |
tgccgtcgtgcagcaaagatt |
224 |
Q |
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| T |
10887769 |
tgccgtcgtgcagcaaagatt |
10887749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 59 - 220
Target Start/End: Original strand, 10866451 - 10866612
Alignment:
| Q |
59 |
aggagtcgtgccaaagaagctacctatgttaccaccaccgaaaatatctgaccagaaagttatgtccatggaagacgaagaggttgtcggtgcagtggta |
158 |
Q |
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| T |
10866451 |
aggagtcttgccgaagaagctacctacgttacctccacccaaaatctccgaccaaaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtg |
10866550 |
T |
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| Q |
159 |
tcgggatcaattccgtcttactcccttgagtcaaagctcggagattgccgtcgtgcagcaaa |
220 |
Q |
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| T |
10866551 |
tcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaa |
10866612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 59 - 220
Target Start/End: Complemental strand, 10873854 - 10873693
Alignment:
| Q |
59 |
aggagtcgtgccaaagaagctacctatgttaccaccaccgaaaatatctgaccagaaagttatgtccatggaagacgaagaggttgtcggtgcagtggta |
158 |
Q |
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| T |
10873854 |
aggagtcttgccgaagaagctacctacgttacctccacccaaaatctccgaccaaaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtg |
10873755 |
T |
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| Q |
159 |
tcgggatcaattccgtcttactcccttgagtcaaagctcggagattgccgtcgtgcagcaaa |
220 |
Q |
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| T |
10873754 |
tcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaa |
10873693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 59 - 220
Target Start/End: Complemental strand, 10878925 - 10878764
Alignment:
| Q |
59 |
aggagtcgtgccaaagaagctacctatgttaccaccaccgaaaatatctgaccagaaagttatgtccatggaagacgaagaggttgtcggtgcagtggta |
158 |
Q |
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| T |
10878925 |
aggagtcttgccgaagaagctacctacgttacctccacccaaaatctccgaccaaaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtg |
10878826 |
T |
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| Q |
159 |
tcgggatcaattccgtcttactcccttgagtcaaagctcggagattgccgtcgtgcagcaaa |
220 |
Q |
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| T |
10878825 |
tcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaa |
10878764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 59 - 220
Target Start/End: Complemental strand, 10883996 - 10883835
Alignment:
| Q |
59 |
aggagtcgtgccaaagaagctacctatgttaccaccaccgaaaatatctgaccagaaagttatgtccatggaagacgaagaggttgtcggtgcagtggta |
158 |
Q |
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| T |
10883996 |
aggagtcttgccgaagaagctacctacgttacctccacccaaaatctccgaccaaaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtg |
10883897 |
T |
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| Q |
159 |
tcgggatcaattccgtcttactcccttgagtcaaagctcggagattgccgtcgtgcagcaaa |
220 |
Q |
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| T |
10883896 |
tcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaa |
10883835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 214
Target Start/End: Original strand, 39676070 - 39676170
Alignment:
| Q |
114 |
aaagttatgtccatggaagacgaagaggttgtcggtgcagtggtatcgggatcaattccgtcttactcccttgagtcaaagctcggagattgccgtcgtg |
213 |
Q |
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| T |
39676070 |
aaagttttgtccatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccgacgtg |
39676169 |
T |
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| Q |
214 |
c |
214 |
Q |
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| T |
39676170 |
c |
39676170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 206
Target Start/End: Original strand, 10046135 - 10046218
Alignment:
| Q |
123 |
tccatggaagacgaagaggttgtcggtgcagtggtatcgggatcaattccgtcttactcccttgagtcaaagctcggagattgc |
206 |
Q |
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||||||||||| || ||||||||| |||| |||||| | || |||||||||| ||||| ||||| ||||| |||||||||||| |
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| T |
10046135 |
tccatggaagatgacgaggttgtccgtgcggtggtaaccggtacaattccgtcatactcgcttgaatcaaaactcggagattgc |
10046218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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