View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8279_low_2 (Length: 429)
Name: NF8279_low_2
Description: NF8279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8279_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 161 - 420
Target Start/End: Complemental strand, 55269018 - 55268761
Alignment:
| Q |
161 |
tacatactataaatcattcatttaatccatttataattgaagttgaactaataactcccacttattttagttcaagtgtgagtgagtaattaaacggatt |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55269018 |
tacatactataaatcattcatttaatccatttataattgaagttgaactaataactcccacttattttagttcaagtgtgagtgagtaattaaacggatt |
55268919 |
T |
|
| Q |
261 |
aaaaacaacattggaggtactatgcaaattccaaacaacacctaaggatgtcaacggggtcgatgggggtactcctctgctccgtagatggggttgcata |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
55268918 |
aaaaacaacattggaggtactatgcaaattccaaacaacacctaaggatgtcaacggggtcgatgggggtactcctctgcttcttagatggggttgcata |
55268819 |
T |
|
| Q |
361 |
ctctctaggagtgcgttcctcaaccatatcgtttttgtttttgtgtgtgtttcttcttct |
420 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
55268818 |
ctctctaggagtgcgttcctcagccatatcgtttttgtttttgt--gtgtttcttcttct |
55268761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 55269193 - 55269054
Alignment:
| Q |
22 |
atgttaatctactactattattaatcttttgatttatgatctgtcacatagtgagtttcttttagcaatggaaccacatctcatccaaatttggaggaat |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
55269193 |
atgttaatctactactattattaatcttttgatttatgatctgtcacatattgagtttcttttagcaatggaaccacatctcatcccaatttggaggaat |
55269094 |
T |
|
| Q |
122 |
gagacgaaagcaaccataatccattacttctattttatat |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55269093 |
gagacgaaagcaaccataatccattacttctattttatat |
55269054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 55262493 - 55262349
Alignment:
| Q |
22 |
atgttaatctactactattattaatcttttgatttatgatctgtcacatagtgagtttcttttagcaatggaaccacatct-----catccaaatttgga |
116 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |
|
|
| T |
55262493 |
atgttaatctactactattattaatattttgatttatgatcagtcacatagtgagtttcttttagcaatggaaccacatctcatctcatcccaatttgaa |
55262394 |
T |
|
| Q |
117 |
ggaatgagacgaaagcaaccataatccattacttctattttatat |
161 |
Q |
| |
|
| ||||||| ||||||| |||||||| |||| || |||||||||| |
|
|
| T |
55262393 |
gaaatgagatgaaagcatccataatctattatttatattttatat |
55262349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 345 - 420
Target Start/End: Complemental strand, 29952612 - 29952537
Alignment:
| Q |
345 |
tagatggggttgcatactctctaggagtgcgttcctcaaccatatcgtttttgtttttgtgtgtgtttcttcttct |
420 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| | ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29952612 |
tagatggggttgcatactctctaagagtgtgttcctcagctatatcgtttctgtttttgtgtgtgtttcttcttct |
29952537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 420
Target Start/End: Original strand, 25592353 - 25592429
Alignment:
| Q |
344 |
gtagatggggttgcatactctctaggagtgcgttcctcaaccatatcgtttttgtttttgtgtgtgtttcttcttct |
420 |
Q |
| |
|
|||||||||| |||||||||||| ||||| ||||||| ||||||||||| | || ||| || |||||||||||| |
|
|
| T |
25592353 |
gtagatggggcggcatactctctaagagtgtattcctcagccatatcgtttctattattgcatgcgtttcttcttct |
25592429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 393
Target Start/End: Complemental strand, 25950348 - 25950296
Alignment:
| Q |
341 |
tccgtagatggggttgcatactctctaggagtgcgttcctcaaccatatcgtt |
393 |
Q |
| |
|
|||||||| ||||||||||||||| || |||||||||||||| ||||||||| |
|
|
| T |
25950348 |
tccgtagaaggggttgcatactctttaagagtgcgttcctcagtcatatcgtt |
25950296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 25785490 - 25785530
Alignment:
| Q |
341 |
tccgtagatggggttgcatactctctaggagtgcgttcctc |
381 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
25785490 |
tccgtagatgggattgcatactctttaagagtgcgttcctc |
25785530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University