View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8279_low_5 (Length: 366)
Name: NF8279_low_5
Description: NF8279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8279_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 366
Target Start/End: Complemental strand, 7447928 - 7447579
Alignment:
| Q |
17 |
atattttgacataagatgcgagagtagagtaatttaaacatttctcaatagatgagagtgtaatttactttatatattatctttgtaatcttattttgat |
116 |
Q |
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| T |
7447928 |
atattttgacataagatgagagagtagagtaatttaaacatttctcaatagatgagagtgtaatttactttatatattatctttgtaatcttattttgat |
7447829 |
T |
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| Q |
117 |
atgtcatgtcattgtaattttatcttgttattttttgaaaccctatactgttaataatatgcactagacacaaacgtttgcaaatttaagtgagtaagaa |
216 |
Q |
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| T |
7447828 |
atgtcatgtcattgtaattttatcttgttattttttgaaaccctatactgttaataatatgcactagacacaaacgtttgcaaatttaagtgagtaagaa |
7447729 |
T |
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| Q |
217 |
aatattccaccatttttaatacatattcccccaaacaataagtcagaaaaagtcnnnnnnnnnnnngtcagaagcatatgcatatattgccaaaaataaa |
316 |
Q |
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| T |
7447728 |
aatattccaccatttttaatacatattcccccaaacaataagtcagaaaaagtcaacaaaaaaaaagtcagaagcatatgcatatattgccaaaaataaa |
7447629 |
T |
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| Q |
317 |
atagaaataaggtgacccgtttgattataattcaatctcattattaccat |
366 |
Q |
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| T |
7447628 |
atagaaataaggtgacccgtttgattagaattcaatctcattattaccat |
7447579 |
T |
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