View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8279_low_6 (Length: 329)
Name: NF8279_low_6
Description: NF8279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8279_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 29136271 - 29136570
Alignment:
| Q |
18 |
ttagcaacatcgtgtggtcgatccaagtggtaagagactcgggcaccttaagtaggtggtcagtagtacaatctctgactgtgtatggaaaaatctcaat |
117 |
Q |
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| T |
29136271 |
ttagcaacatcgtgtg-tcgatccaagtggtaagagactcgagcaccttaagtaggtggtcagtagttcaatctctgactgt--atggaaaaatctcaat |
29136367 |
T |
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| Q |
118 |
tgggagggagaacttaccttgtgtgtccaacaagtttcccagaggagattagtcacaatcaaactcagttgaatactttgtacgtatgatatggctataa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29136368 |
tgggagggagaacttaccttgtgtgtccaacaagtttcccagaggagattagtcacaatcaaactcagttgaatactttgtacgtatgatatggctataa |
29136467 |
T |
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| Q |
218 |
attcactgcatgttttctcagggtagtattgtactgagtctatttatttgtgtttctttattctaattatctgactcaattgaatttcaagttttagtat |
317 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29136468 |
attcactgcatgttttctcagggtagtattgtattgagtctatttatttgtgtttctttattctaattatctgactcaattgaatttcaagttttagtat |
29136567 |
T |
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