View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8279_low_8 (Length: 263)

Name: NF8279_low_8
Description: NF8279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8279_low_8
NF8279_low_8
[»] chr5 (16 HSPs)
chr5 (93-253)||(24049420-24049578)
chr5 (9-101)||(32405-32497)
chr5 (9-101)||(12789367-12789459)
chr5 (9-101)||(23546428-23546520)
chr5 (93-253)||(24052556-24052714)
chr5 (9-101)||(24933010-24933102)
chr5 (9-101)||(12764692-12764786)
chr5 (9-101)||(20941533-20941626)
chr5 (9-101)||(7865132-7865226)
chr5 (9-101)||(9811435-9811529)
chr5 (9-101)||(12703576-12703670)
chr5 (9-76)||(25805088-25805155)
chr5 (9-101)||(22941757-22941850)
chr5 (9-101)||(26245607-26245701)
chr5 (9-38)||(39535762-39535791)
chr5 (175-215)||(24102163-24102203)
[»] scaffold0264 (1 HSPs)
scaffold0264 (9-101)||(3379-3471)
[»] chr8 (15 HSPs)
chr8 (9-101)||(27007221-27007313)
chr8 (9-101)||(27014364-27014456)
chr8 (9-101)||(27880191-27880283)
chr8 (9-101)||(28020372-28020464)
chr8 (9-101)||(21917182-21917274)
chr8 (9-101)||(45533977-45534069)
chr8 (9-101)||(22130313-22130405)
chr8 (9-101)||(22659197-22659290)
chr8 (9-97)||(6431396-6431486)
chr8 (9-101)||(26240990-26241084)
chr8 (9-101)||(25611701-25611794)
chr8 (9-93)||(2962634-2962720)
chr8 (9-101)||(8370956-8371049)
chr8 (9-97)||(21969843-21969932)
chr8 (52-101)||(12562629-12562679)
[»] chr7 (17 HSPs)
chr7 (9-101)||(2205058-2205150)
chr7 (9-101)||(18139042-18139134)
chr7 (9-101)||(30254644-30254736)
chr7 (9-101)||(48808200-48808292)
chr7 (9-101)||(15730257-15730349)
chr7 (9-101)||(18400610-18400702)
chr7 (9-101)||(18407594-18407686)
chr7 (9-101)||(8465505-8465598)
chr7 (9-101)||(18258826-18258920)
chr7 (9-101)||(19231394-19231487)
chr7 (9-101)||(47166562-47166656)
chr7 (6-101)||(19393126-19393223)
chr7 (9-97)||(41680671-41680760)
chr7 (9-101)||(28131067-28131161)
chr7 (9-101)||(34129079-34129173)
chr7 (9-101)||(10668604-10668697)
chr7 (9-74)||(18257269-18257335)
[»] chr6 (10 HSPs)
chr6 (9-101)||(27525265-27525357)
chr6 (9-101)||(1585812-1585904)
chr6 (9-101)||(22859592-22859684)
chr6 (9-101)||(27508051-27508143)
chr6 (9-101)||(16789577-16789669)
chr6 (9-101)||(14074986-14075079)
chr6 (9-101)||(8613425-8613519)
chr6 (9-101)||(18019532-18019625)
chr6 (12-101)||(33317371-33317462)
chr6 (9-101)||(20736032-20736126)
[»] chr4 (15 HSPs)
chr4 (9-101)||(2677519-2677611)
chr4 (9-101)||(3368727-3368819)
chr4 (9-101)||(15815527-15815619)
chr4 (9-101)||(18110747-18110839)
chr4 (9-101)||(26532119-26532211)
chr4 (9-101)||(5870923-5871015)
chr4 (9-101)||(18163668-18163760)
chr4 (9-101)||(20244443-20244535)
chr4 (9-101)||(4675687-4675779)
chr4 (9-101)||(17299663-17299755)
chr4 (9-101)||(4546568-4546662)
chr4 (9-101)||(9488052-9488147)
chr4 (9-101)||(34976057-34976151)
chr4 (9-101)||(30040192-30040286)
chr4 (12-101)||(15462007-15462097)
[»] chr2 (3 HSPs)
chr2 (9-101)||(24249736-24249828)
chr2 (9-101)||(30174883-30174975)
chr2 (9-101)||(24228917-24229011)
[»] chr1 (14 HSPs)
chr1 (9-101)||(9456622-9456714)
chr1 (9-101)||(20390943-20391035)
chr1 (9-101)||(20779349-20779441)
chr1 (9-101)||(42816693-42816785)
chr1 (9-101)||(14482396-14482488)
chr1 (9-101)||(22669961-22670053)
chr1 (9-101)||(28134426-28134519)
chr1 (9-65)||(9460754-9460810)
chr1 (9-101)||(19706142-19706235)
chr1 (9-101)||(22612998-22613091)
chr1 (9-101)||(47667188-47667281)
chr1 (9-97)||(634448-634538)
chr1 (9-76)||(43802068-43802135)
chr1 (9-41)||(33283560-33283592)
[»] scaffold0028 (1 HSPs)
scaffold0028 (9-101)||(120236-120328)
[»] chr3 (9 HSPs)
chr3 (9-101)||(20147258-20147350)
chr3 (9-101)||(55427527-55427619)
chr3 (9-101)||(12300416-12300508)
chr3 (12-101)||(11788093-11788184)
chr3 (9-101)||(15846239-15846332)
chr3 (9-101)||(21034744-21034837)
chr3 (9-101)||(21399298-21399391)
chr3 (9-101)||(28088612-28088705)
chr3 (9-101)||(25978430-25978524)
[»] scaffold0112 (1 HSPs)
scaffold0112 (9-101)||(689-782)
[»] scaffold0099 (1 HSPs)
scaffold0099 (9-92)||(9653-9741)
[»] scaffold0466 (1 HSPs)
scaffold0466 (9-101)||(12652-12746)
[»] scaffold0389 (1 HSPs)
scaffold0389 (9-76)||(694-761)
[»] scaffold0111 (1 HSPs)
scaffold0111 (52-101)||(27047-27096)
[»] scaffold0297 (1 HSPs)
scaffold0297 (19-101)||(492-576)
[»] scaffold0086 (1 HSPs)
scaffold0086 (9-74)||(54295-54362)


Alignment Details
Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 93 - 253
Target Start/End: Complemental strand, 24049578 - 24049420
Alignment:
Q  93 ccaaggcatcaaagtttactagtaaagacaacaagaatggcctnnnnnnnnnngaatatgattaaattaatttaagttaaaatggccttagaactgtgta 192  Q
    |||||||||||||||||   |||||||||||||||||||||||          |||||||||||||||||||||||||| ||||| ||||||| ||||||    
T  24049578 ccaaggcatcaaagtttttaagtaaagacaacaagaatggcctaaaaaaaaa-gaatatgattaaattaatttaagttagaatggtcttagaa-tgtgta 24049481  T
Q  193 tgtttattgctttgagatcaacatcagcatatcagcctaccatattacatgtgatgtccat 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24049480 tgtttattgctttgagatcaacatcagcatatcagcctaccatattacacgtgatgtccat 24049420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 32497 - 32405
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32497 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 32405  T

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Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 12789367 - 12789459
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12789367 aagaatgtcaagtgatctgacgaaacctttcatgataacacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 12789459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 23546520 - 23546428
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23546520 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 23546428  T

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Target: chr5; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 93 - 253
Target Start/End: Complemental strand, 24052714 - 24052556
Alignment:
Q  93 ccaaggcatcaaagtttactagtaaagacaacaagaatggcctnnnnnnnnnngaatatgattaaattaatttaagttaaaatggccttagaactgtgta 192  Q
    |||||||||||||||||   |||||||||||||||||||||||          |||||||||||||||||||||||||| ||||| ||||||| ||||||    
T  24052714 ccaaggcatcaaagtttttaagtaaagacaacaagaatggcctaaaaaaaaa-gaatatgattaaattaatttaagttagaatggtcttagaa-tgtgta 24052617  T
Q  193 tgtttattgctttgagatcaacatcagcatatcagcctaccatattacatgtgatgtccat 253  Q
    ||||| |||||||| |||||||||||||||||||||| ||||||||||| |||||||||||    
T  24052616 tgtttcttgctttgtgatcaacatcagcatatcagccaaccatattacacgtgatgtccat 24052556  T

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Target: chr5; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 24933010 - 24933102
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24933010 aagaatgtcaagtgatctgacgaaacctttcatgataacacatatgtgtataattactcctttgtctcaatatcttcattgatctcaaggcat 24933102  T

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Target: chr5; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 12764692 - 12764786
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt--cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||  ||| ||||    |||||||| ||||||||||||||||||||||||| ||||||||||| ||||    
T  12764692 aagaatgtcaagtgatctgacgaaaccttttccatgataatgattatgtgtacaattactcctttgtctcaatatctttattgatcccaatgcat 12764786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 20941626 - 20941533
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatc-ttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| |   ||||||| ||||||||||||||||| ||| | || ||||||||||||||||    
T  20941626 aagaatgtcaagtgatctgacgaaacctttcatgataatattcatgtgtacaattactcctttgtctcgataccttttattgatcccaaggcat 20941533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 7865132 - 7865226
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt--cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    |||||||||||||||||||||||||| |||  ||| |||| |  |||||||| ||||||||||||||||| ||||||| ||||||||||| ||||    
T  7865132 aagaatgtcaagtgatctgacgaaacattttccatgataataattatgtgtacaattactcctttgtctcgatatctttattgatcccaatgcat 7865226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 9811435 - 9811529
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt--cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||  ||| |||| |  |||||||| ||||||||||||||||| ||||||| ||||| ||||| ||||    
T  9811435 aagaatgtcaagtgatctgacgaaaccttttccatgataataattatgtgtacaattactcctttgtctcgatatctttattgaccccaatgcat 9811529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 12703576 - 12703670
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt--cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||  ||| |||| |  |||||||| ||||||||||||||||| ||||||| ||||| ||||| ||||    
T  12703576 aagaatgtcaagtgatctgacgaaacctttttcatgataataattatgtgtacaattactcctttgtctcgatatctttattgaccccaatgcat 12703670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 25805088 - 25805155
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctc 76  Q
    ||||||||||||||||||||||||||||||||| |||| |   |||||||||||||||||||||||||    
T  25805088 aagaatgtcaagtgatctgacgaaacctttcatgataatattcatgtgtataattactcctttgtctc 25805155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 22941850 - 22941757
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatc-ttcattgatcccaaggcat 101  Q
    |||||||| |||||||||||||||||||||||| |||| |   ||||||| ||||||||||||||||| ||| | || ||||||||||||||||    
T  22941850 aagaatgtaaagtgatctgacgaaacctttcatgataatattcatgtgtacaattactcctttgtctcgataccttttattgatcccaaggcat 22941757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 26245701 - 26245607
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt--cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    |||||||||||||||||||||||||| |||  ||| |||| |  |||||||| |||||||||||||||  |||||||  ||||||| ||||||||    
T  26245701 aagaatgtcaagtgatctgacgaaactttttccatgataatatttatgtgtacaattactcctttgtcctaatatctatattgatctcaaggcat 26245607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 39535791 - 39535762
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt 38  Q
    ||||||||||||||||||||||||||||||    
T  39535791 aagaatgtcaagtgatctgacgaaaccttt 39535762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 24102203 - 24102163
Alignment:
Q  175 tggccttagaactgtgtatgtttattgctttgagatcaaca 215  Q
    ||||||||||||| ||||||||| |||||||||| ||||||    
T  24102203 tggccttagaactttgtatgtttcttgctttgagttcaaca 24102163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 3379 - 3471
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3379 aagaatgtcaagtgatctgacgaaacctttcatgataacacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 3471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 27007221 - 27007313
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27007221 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 27007313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 27014364 - 27014456
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27014364 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 27014456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 27880191 - 27880283
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27880191 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 27880283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 28020372 - 28020464
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28020372 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 28020464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 21917274 - 21917182
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21917274 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatctcaaggcat 21917182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 45533977 - 45534069
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45533977 aagaatgtcaagtgatctgacgaaacctttcatgataacacatatgtgtataattactcctttgtctcaatatcttcattgatctcaaggcat 45534069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 22130313 - 22130405
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    |||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22130313 aagagtgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattacccctttgtctcaatatcttcattgatcccaaggcat 22130405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 22659197 - 22659290
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttc-ataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    |||||||||||||||||||||||||| |||| || |||| ||  ||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  22659197 aagaatgtcaagtgatctgacgaaacttttccatgataatactcatgtgtacaattactcctttgtctcaatatctttattgatcccaaggcat 22659290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 6431486 - 6431396
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt--cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaag 97  Q
    ||||||||||||||||||||||||||||||  ||| |||| |  |||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  6431486 aagaatgtcaagtgatctgacgaaacctttttcatgataataattatgtgtaaaattactcctttgtctcgatatctttattgatcccaag 6431396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 26241084 - 26240990
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt-cataataaaacatatgtgtataattactcctttgtctcaatatc-ttcattgatcccaaggcat 101  Q
    |||||||||||||||||||||||||||||| ||| |||| ||  ||||||| ||||||||||||||||| ||| | || ||||||||||||||||    
T  26241084 aagaatgtcaagtgatctgacgaaacctttccatgataatactcatgtgtacaattactcctttgtctccataccttttattgatcccaaggcat 26240990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 25611794 - 25611701
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatc-ttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| |   ||| ||| ||||||||||||||||| ||| | || ||||||| ||||||||    
T  25611794 aagaatgtcaagtgatctgacgaaacctttcatgataatattcatgcgtacaattactcctttgtctcgataccttttattgatctcaaggcat 25611701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 2962634 - 2962720
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt--cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcc 93  Q
    |||||||||||||||||| |||||||||||  ||| |||| |  |||||||| |||||||||||| |||| ||||||| ||||||||    
T  2962634 aagaatgtcaagtgatctaacgaaaccttttccatgataataattatgtgtacaattactcctttttctcgatatctttattgatcc 2962720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 8370956 - 8371049
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatctt-cattgatcccaaggcat 101  Q
    |||||||||||||||||||||||||||| ||||  ||| |   ||||||| |||||||||||| |||| ||| |||  ||||||||||||||||    
T  8370956 aagaatgtcaagtgatctgacgaaacctctcatggtaatattcatgtgtacaattactcctttatctcgataccttatattgatcccaaggcat 8371049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 21969932 - 21969843
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatc-ttcattgatcccaag 97  Q
    |||||| |||||||||||||||||||||||||| |||| |   | ||||| ||||||||||||||||| ||| | || ||||||||||||    
T  21969932 aagaatatcaagtgatctgacgaaacctttcatgataatattcacgtgtacaattactcctttgtctcgataccttttattgatcccaag 21969843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 12562679 - 12562629
Alignment:
Q  52 atgtgtataattactcctttgtctcaatatc-ttcattgatcccaaggcat 101  Q
    ||||||| ||||||||||||||||||||| | || ||||||||||||||||    
T  12562679 atgtgtacaattactcctttgtctcaataccttttattgatcccaaggcat 12562629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 2205150 - 2205058
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2205150 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 2205058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 18139042 - 18139134
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18139042 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 18139134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 30254736 - 30254644
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30254736 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 30254644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 48808200 - 48808292
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48808200 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 48808292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 15730349 - 15730257
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15730349 aagaatgtcaagtgatctgacgaaacctttcatgataacacatatgtgtataattactcctttgtctcaatatcttcattgatctcaaggcat 15730257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 18400702 - 18400610
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18400702 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattacccctttgtctcaatatcttcattgatcccaaggcat 18400610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 18407686 - 18407594
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18407686 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattacccctttgtctcaatatcttcattgatcccaaggcat 18407594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 8465598 - 8465505
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatc-ttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| |   ||||||||||||||||||||||||| ||| | || ||||||| ||||||||    
T  8465598 aagaatgtcaagtgatctgacgaaacctttcatgataatattcatgtgtataattactcctttgtctcgataccttttattgatctcaaggcat 8465505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 18258826 - 18258920
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt--cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||  ||| |||| |  |||| ||| ||||||||| ||||||| ||||||| ||||||||||||||||    
T  18258826 aagaatgtcaagtgatctgacgaaaccttttccatgataataattatgcgtacaattactccgttgtctcgatatctttattgatcccaaggcat 18258920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 19231487 - 19231394
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttc-ataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||| ||||||||| || |||| ||  |||| || |||||||| |||||||| ||||||| ||||||||||||||||    
T  19231487 aagaatgtcaagtgatctgacaaaacctttccatgataatactcatgtctacaattactcttttgtctcgatatctttattgatcccaaggcat 19231394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 47166562 - 47166656
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt--cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    |||||||||||||||||| |||||||||||  ||| |||| |  |||||||| |||||||| |||||||| ||||||| ||||||||||| ||||    
T  47166562 aagaatgtcaagtgatctaacgaaaccttttccatgataataattatgtgtacaattactcttttgtctcgatatctttattgatcccaaagcat 47166656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 19393126 - 19393223
Alignment:
Q  6 gagaagaatgtcaagtgatctgacgaaaccttt--cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||| |||||||||  ||| |||| |   |||||||||||||||||||||||  |||||||  ||||||| ||||||||    
T  19393126 gagaagaatgtcaagtgatctgatgaaaccttttccatgataatattcatgtgtataattactcctttgtcctaatatctatattgatcacaaggcat 19393223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 41680671 - 41680760
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttc-ataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaag 97  Q
    |||||||||||||||| |||||||  ||||| || |||| ||  ||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  41680671 aagaatgtcaagtgatatgacgaagactttccatgataatactcatgtgtacaattactcctttgtctctatatctttattgatcccaag 41680760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 28131161 - 28131067
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt--cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    |||||||||||||||| |||||||||||||  ||| |||| || ||||||||| ||||||| ||||||  |||||||  ||||||| ||||||||    
T  28131161 aagaatgtcaagtgatatgacgaaaccttttccatgataatacttatgtgtatgattactcatttgtcctaatatctatattgatctcaaggcat 28131067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 34129173 - 34129079
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt--cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    |||||||||||||||| |||||||||||||  ||| |||| |  ||||| || ||||||||||||||||| ||||||| ||||||| ||| ||||    
T  34129173 aagaatgtcaagtgatatgacgaaaccttttccatgataataattatgtttacaattactcctttgtctcgatatctttattgatctcaatgcat 34129079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 10668604 - 10668697
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt-cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    |||||||||  ||||||||||||||| ||| ||| |||| |   ||||||| ||||||||||||||||| |||||||  |||||||||||||||    
T  10668604 aagaatgtcttgtgatctgacgaaactttttcatgataatattcatgtgtacaattactcctttgtctcgatatctttgttgatcccaaggcat 10668697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 18257269 - 18257335
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt-cataataaaacatatgtgtataattactcctttgtc 74  Q
    ||||||||||||||||||||| |||||||| |||||||| |   ||||||| |||||||||||||||    
T  18257269 aagaatgtcaagtgatctgacaaaacctttccataataatattcatgtgtacaattactcctttgtc 18257335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 27525265 - 27525357
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27525265 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 27525357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 1585812 - 1585904
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1585812 aagaatgtcaagtgatctgacgaaacctttcatgataacacatatgtgtataattactcctttgtctcaatatcttcattgatctcaaggcat 1585904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 22859592 - 22859684
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22859592 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatctcaaggcat 22859684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 27508051 - 27508143
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27508051 aagaatgtcaagtgatccgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 27508143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 16789669 - 16789577
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16789669 aagaatgtcaagtgatctgacgaaacctttcatgataacacataggtgtataattactcctttgtcacaatatcttcattgatcccaaggcat 16789577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 14075079 - 14074986
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttc-ataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||| || |||| ||  ||||||| ||||||||||||||||| ||||| | ||||||||||||||||    
T  14075079 aagaatgtcaagtgatctgacgaaacctttccatgataatactcatgtgtacaattactcctttgtctcgatatcattattgatcccaaggcat 14074986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 8613519 - 8613425
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt--cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    |||||||||||||||||||||||||| |||  ||| |||| |  |||||||| ||||||||||||||||| ||||||| ||||||||||| ||||    
T  8613519 aagaatgtcaagtgatctgacgaaacattttccatgataataattatgtgtacaattactcctttgtctcgatatctttattgatcccaatgcat 8613425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 18019532 - 18019625
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatc-ttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| |   ||||||| ||||||||||||||||| ||| | || ||||||| ||||||||    
T  18019532 aagaatgtcaagtgatctgacgaaacctttcatgataatattcatgtgtacaattactcctttgtctcgataccttttattgatctcaaggcat 18019625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 33317462 - 33317371
Alignment:
Q  12 aatgtcaagtgatctgacgaaaccttt--cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||| |||  ||| |||| |  | |||||| ||||||||||||||||| ||||||| ||||||||||| ||||    
T  33317462 aatgtcaagtgatctgacgaaacattttccatgataataattttgtgtacaattactcctttgtctcgatatctttattgatcccaatgcat 33317371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 20736032 - 20736126
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt--cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||  ||| |||| |   ||||||| ||||| |||||||||  |||||||  ||| ||| ||||||||    
T  20736032 aagaatgtcaagtgatctgacgaaaccttttccatgataatattcatgtgtacaattattcctttgtcataatatctatatttatcacaaggcat 20736126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 2677611 - 2677519
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2677611 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 2677519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 3368727 - 3368819
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3368727 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 3368819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 15815619 - 15815527
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15815619 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 15815527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 18110747 - 18110839
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18110747 aagaatgtcaagtgatctgacgaaacctttcatgataacacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 18110839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 26532211 - 26532119
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26532211 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 26532119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 5871015 - 5870923
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5871015 aagaatgtcaagtgatctgacgaaacctttcatgataacacataagtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 5870923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 18163760 - 18163668
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18163760 aagaatgtcaagtgatctgacgaaacctttcatgataacacatatgtgtataattactcctttgtctcaatatcttcattgatctcaaggcat 18163668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 20244535 - 20244443
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20244535 aagaatgtcaagtgatctgacgaaacctttcatgataacacatatgtgtataattactcctttgtctcaatatcttcattgatctcaaggcat 20244443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 4675687 - 4675779
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  4675687 aagaatgtcaagtgatctgacgaaacctttcatgataacacatatgtgtataattactcctttgtctcaatatcttcattgatctcaaagcat 4675779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 17299663 - 17299755
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  17299663 aagaatgtcaagtgatctgacgaaacctttcatgataacacataggtgcataattactcctttgtcacaatatcttcattgatcccaaggcat 17299755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 4546662 - 4546568
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt--cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    |||||||||||||||||| |||||||||||  ||| |||| |  |||||||| ||||||||||||||||  ||||||| ||||||||||||||||    
T  4546662 aagaatgtcaagtgatctaacgaaaccttttccatgataataattatgtgtacaattactcctttgtcttgatatctttattgatcccaaggcat 4546568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 9488147 - 9488052
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt---cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||| ||||   ||| |||| |  |||| ||| ||||||||||||||||| ||||||| ||||||||||||||||    
T  9488147 aagaatgtcaagtgatctgacgaaaactttttgcatgataataattatgcgtacaattactcctttgtctcgatatctttattgatcccaaggcat 9488052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 34976151 - 34976057
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt-cataataaaacatatgtgtataattactcctttgtctcaatatc-ttcattgatcccaaggcat 101  Q
    |||||||||||||||||||||||||||||| ||| |||| ||  ||||||| |||||||||||||||||  || | || ||||||||||||||||    
T  34976151 aagaatgtcaagtgatctgacgaaacctttccatgataatactcatgtgtacaattactcctttgtctcggtaccttttattgatcccaaggcat 34976057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 30040192 - 30040286
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt--cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    |||||||||||||||||||||||||| |||  ||| |||| |  |||||||| |||||||||||||||  |||||||  ||||||| ||||||||    
T  30040192 aagaatgtcaagtgatctgacgaaactttttccatgataatatttatgtgtacaattactcctttgtcctaatatctatattgatcacaaggcat 30040286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 15462097 - 15462007
Alignment:
Q  12 aatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatc-ttcattgatcccaaggcat 101  Q
    ||||||||||||||||| |||||||||||| |||| |   ||||||| ||||||||||||||||| ||| | || ||||||| ||||||||    
T  15462097 aatgtcaagtgatctgatgaaacctttcatgataacattcatgtgtacaattactcctttgtctcgataccttttattgatctcaaggcat 15462007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 24249736 - 24249828
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24249736 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 24249828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 30174975 - 30174883
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30174975 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 30174883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 24228917 - 24229011
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt-cataataaaacatatgtgtataattactcctttgtctcaatatc-ttcattgatcccaaggcat 101  Q
    |||||||||||||||||||||||||||||| ||| |||| ||  ||||||| |||||||||||||||||  || | || ||||||||||||||||    
T  24228917 aagaatgtcaagtgatctgacgaaacctttccatgataatactcatgtgtacaattactcctttgtctcggtaccttttattgatcccaaggcat 24229011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 9456714 - 9456622
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9456714 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 9456622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 20390943 - 20391035
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20390943 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 20391035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 20779349 - 20779441
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20779349 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 20779441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 42816693 - 42816785
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42816693 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 42816785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 14482488 - 14482396
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14482488 aagaatgtcaagtgatctgacgaaacctttcatgataacacatatgtgtataattactcctttgtctcaatatcttcattgatctcaaggcat 14482396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 22669961 - 22670053
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22669961 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatctcaaggcat 22670053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 28134426 - 28134519
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatc-ttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| |   ||||||||||||||||||||||||| ||| | || ||||||| ||||||||    
T  28134426 aagaatgtcaagtgatctgacgaaacctttcatgataatattcatgtgtataattactcctttgtctcgataccttttattgatctcaaggcat 28134519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 9460810 - 9460754
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattac 65  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  9460810 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattac 9460754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 19706142 - 19706235
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatc-ttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| |   ||||||| ||||||||||||||||| ||| | || ||||||| ||||||||    
T  19706142 aagaatgtcaagtgatctgacgaaacctttcatgataatattcatgtgtacaattactcctttgtctcgataccttttattgatctcaaggcat 19706235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 22613091 - 22612998
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatc-ttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| |  |||||||| || |||||||||||||| ||| | || ||||||| ||||||||    
T  22613091 aagaatgtcaagtgatctgacgaaacctttcatgataatatttatgtgtacaagtactcctttgtctcgataccttttattgatctcaaggcat 22612998  T

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Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 47667188 - 47667281
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatc-ttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| |   | ||||  ||||||||||||||||| ||| | || ||||||||||||||||    
T  47667188 aagaatgtcaagtgatctgacgaaacctttcatgataatattcacgtgtgcaattactcctttgtctcgataccttttattgatcccaaggcat 47667281  T

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Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 634538 - 634448
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt--cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaag 97  Q
    |||||||||| ||||||||||||||| |||  ||| |||| |   ||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  634538 aagaatgtcatgtgatctgacgaaacattttccatgataatattcatgtgtacaattactcctttgtctcgatatctttattgatcccaag 634448  T

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Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 43802068 - 43802135
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctc 76  Q
    |||||||| ||||||||| |||||||||||||| |||| |   ||||||| |||||||||||||||||    
T  43802068 aagaatgttaagtgatctaacgaaacctttcatgataatattcatgtgtacaattactcctttgtctc 43802135  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 33283560 - 33283592
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcat 41  Q
    ||||||||||||| |||||||||||||||||||    
T  33283560 aagaatgtcaagtaatctgacgaaacctttcat 33283592  T

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Target: scaffold0028 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 120328 - 120236
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  120328 aagaatgtcaagtgatctgacgaaacctttcatgataatacatatgtgtataattacccctttgtctcaatatcttcattgatcccaaggcat 120236  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 20147258 - 20147350
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    |||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20147258 aagaatgtcaagtgatctgacgaaacatttcatgataatacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 20147350  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 55427619 - 55427527
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  55427619 aagaatgtcaagtgatctgacgaaacctttcatgataacacatatgtgtataattactcctttgtctcaatatcttcattgatctcaaggcat 55427527  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 12300508 - 12300416
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12300508 aagaatgtcaagtgatctgacgaaacctttcatgataacacataagtgtataattactcctttgtcacaatatcttcattgatcccaaggcat 12300416  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 11788184 - 11788093
Alignment:
Q  12 aatgtcaagtgatctgacgaaaccttt--cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    |||||||||||||||||||||||||||  ||| |||| |  |||||||| |||||||||||| |||||||||||| ||||||||||||||||    
T  11788184 aatgtcaagtgatctgacgaaaccttttccatgataataattatgtgtacaattactcctttttctcaatatctttattgatcccaaggcat 11788093  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 15846239 - 15846332
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatc-ttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| |   ||||||||||||||||||||||||| ||| | || ||||||| ||||||||    
T  15846239 aagaatgtcaagtgatctgacgaaacctttcatgataatattcatgtgtataattactcctttgtctcgataccttttattgatctcaaggcat 15846332  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 21034837 - 21034744
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatc-ttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| |||| |   ||||||| ||||||||||||||||| ||| | || ||||||||||||||||    
T  21034837 aagaatgtcaagtgatctgacgaaacctttcatgataatattcatgtgtacaattactcctttgtctcgataccttttattgatcccaaggcat 21034744  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 21399391 - 21399298
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatc-ttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||||| ||||||   ||||||| |||||||| |||||||| ||| | || ||||||||||||||||    
T  21399391 aagaatgtcaagtgatctgacgaaacctttcatgataaaattcatgtgtacaattactcttttgtctcgataccttttattgatcccaaggcat 21399298  T

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Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 28088705 - 28088612
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttc-ataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||| || |||| ||  ||||||| |  |||||||||||||| ||||||| ||||||||||||||||    
T  28088705 aagaatgtcaagtgatctgacgaaacctttccatgataatactcatgtgtacagctactcctttgtctcgatatctttattgatcccaaggcat 28088612  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 25978430 - 25978524
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt--cataataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    |||||| ||||||||| ||||||||  |||  ||| |||| |  |||| ||| ||||||||||||||||| ||||||| ||||||||||||||||    
T  25978430 aagaatatcaagtgatttgacgaaatattttccatgataataattatgcgtacaattactcctttgtctcgatatctttattgatcccaaggcat 25978524  T

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Target: scaffold0112 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 782 - 689
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctcaatatc-ttcattgatcccaaggcat 101  Q
    |||||||||||||||||| |||||||||||||| |||| |   ||||||| ||||||||||||||||| ||| | || |||||||| |||||||    
T  782 aagaatgtcaagtgatcttacgaaacctttcatgataatattcatgtgtacaattactcctttgtctcgataccttttattgatccaaaggcat 689  T

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Target: scaffold0099 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 9741 - 9653
Alignment:
Q  9 aagaatgtcaagt-gatctgacgaaa-cctttc-ataataaaacata-tgtgtataattactccttt-gtctcaatatcttcattgatc 92  Q
    ||||||||||||| |||||||||||| |||||| || |||| ||||| ||||||||||||||||||| |||||||||||||||||||||    
T  9741 aagaatgtcaagttgatctgacgaaaacctttctatgataacacataatgtgtataattactccttttgtctcaatatcttcattgatc 9653  T

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Target: scaffold0466 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 12652 - 12746
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcata--ataaaacatatgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||||||||  ||  |||| |  |||||||| |||||||||||||||  ||||||   ||||||| ||||||||    
T  12652 aagaatgtcaagtgatctgacgaaaccttttctatgataatatttatgtgtacaattactcctttgtcctaatatcgatattgatctcaaggcat 12746  T

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Target: scaffold0389 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 761 - 694
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaacctttcataataaaacatatgtgtataattactcctttgtctc 76  Q
    |||||||||||||||||||||||| |||||||| |||| |   | ||||| |||||||||||||||||    
T  761 aagaatgtcaagtgatctgacgaatcctttcatgataatatgcacgtgtacaattactcctttgtctc 694  T

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Target: scaffold0111 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 27096 - 27047
Alignment:
Q  52 atgtgtataattactcctttgtctcaatatcttcattgatcccaaggcat 101  Q
    ||||||||||||||||||||||||  ||||||  ||||||| ||||||||    
T  27096 atgtgtataattactcctttgtcttcatatctatattgatcacaaggcat 27047  T

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Target: scaffold0297 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0297
Description:

Target: scaffold0297; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 576 - 492
Alignment:
Q  19 agtgatctgacgaaaccttt-cataataaaacatatgtgtataattactcctttgtctcaatatc-ttcattgatcccaaggcat 101  Q
    |||||||||||||||||||| ||| |||| ||  || |||  ||||||||||||||||| ||| | || ||||||||||||||||    
T  576 agtgatctgacgaaacctttccatgataatactcatatgttcaattactcctttgtctcgataccttttattgatcccaaggcat 492  T

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Target: scaffold0086 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 54362 - 54295
Alignment:
Q  9 aagaatgtcaagtgatctgacgaaaccttt--cataataaaacatatgtgtataattactcctttgtc 74  Q
    ||||||||||||||| ||||||||||||||  ||| |||| |  ||||||||  ||||||||||||||    
T  54362 aagaatgtcaagtgaactgacgaaaccttttccatgataatatttatgtgtacgattactcctttgtc 54295  T

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