View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8280_high_3 (Length: 299)
Name: NF8280_high_3
Description: NF8280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8280_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 5981002 - 5981278
Alignment:
| Q |
1 |
atgaactcaagaggatggaaatgtcatgtttaagataagacggttgactaaaagagagagttgttgctttgttgttgccggttgaagaagaaaaaagtgc |
100 |
Q |
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| T |
5981002 |
atgaacccaagaggatggaaatgtcatgtttaagataagacggttgactaaaagagagagttgttgctttgttgttgccggttgaagaagaaaaaagtgc |
5981101 |
T |
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| Q |
101 |
aaattttattggaccgtttggctttgagcaattaaggttgctagaattgaagtacactcg-aaaaaacatcaagaaggccttttattctggttgtggata |
199 |
Q |
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| T |
5981102 |
aaattttattggaccgtttggctttgagcaattaaggttgctagaattgaagtacactcgaaaaaaacatccagaaggccttttattctggttgtggata |
5981201 |
T |
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| Q |
200 |
aagaaatatatgatatttatataactatcctgtgacaagttttagataattctctcttctattcataagatgttgtt |
276 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5981202 |
aagaaatatatgatatttatataactatcttgcgacaagttttagataattcataattctattcataagatgttgtt |
5981278 |
T |
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