View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8280_high_4 (Length: 285)
Name: NF8280_high_4
Description: NF8280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8280_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 30 - 272
Target Start/End: Complemental strand, 14773729 - 14773487
Alignment:
| Q |
30 |
aagttcataataccagcatatgatagaaactatggattaccttttttaacattataaggataggtttccctattaaattattacttggtgcctttgatgt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14773729 |
aagttcataataccagcatatgatagaaactatggattaccttttttaacattataaggataggtttccctattaaattattacttggtgcctttgttgt |
14773630 |
T |
|
| Q |
130 |
atataaaatcaaaaattataactcgttttcgtggatttttagctcctaagcaacttttcaacatttgatatcaaaagcatttagaaaaactcaattgtgc |
229 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14773629 |
atataaaataaaaaattataactcgttttcgtggatttttagctcataagcaacttttcaacatttgatatcaaaagcatttagaaaaactcaattgtgc |
14773530 |
T |
|
| Q |
230 |
atttggatgattcctaaaacaactaataggccgaagatcacag |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14773529 |
atttggatgattcctaaaacaactaataggccgaagatcacag |
14773487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 93 - 259
Target Start/End: Complemental strand, 17880505 - 17880334
Alignment:
| Q |
93 |
gtttccctattaaattattacttggtgcctttgatgtatataaaatcaaaaattataactcgttttcgtggatttttagctc---ctaagcaacttttca |
189 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |||| |||||||||||||||| |||||||||||||| |
|
|
| T |
17880505 |
gtttcactattaaattattacttggtgcctttggtgtatataaactaaaaaattataacttgtttccgtggatttttagctcataataagcaacttttca |
17880406 |
T |
|
| Q |
190 |
acatttgatatcaaaagcatttagaaaaactcaattgtgcatttggatga--ttcctaaaacaactaatagg |
259 |
Q |
| |
|
|||| || ||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
17880405 |
acatccgaaatcaaaagcatttagaaaaacatcattatgcatttggatgaacttcctaaaacaacttatagg |
17880334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 15015496 - 15015349
Alignment:
| Q |
30 |
aagttcataataccagcatatgatagaaactatggattaccttttttaa---cattataaggataggtttccctattaaattattacttggtgcctttga |
126 |
Q |
| |
|
|||| ||||||| |||||||||||||||| |||||||||| |||||| | |||||||| ||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
15015496 |
aagtacataatatcagcatatgatagaaattatggattacattttttcatgttattataagcataggtttcactattaaattattacctggtgcctttga |
15015397 |
T |
|
| Q |
127 |
tgtatataaaatcaaaaattataactcgttttcgtggatttttagctc |
174 |
Q |
| |
|
|| ||||||| | ||||||||||||| |||| | | |||||||||||| |
|
|
| T |
15015396 |
tgcatataaactaaaaaattataacttgtttccatagatttttagctc |
15015349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University