View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8280_high_5 (Length: 269)
Name: NF8280_high_5
Description: NF8280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8280_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 14773414 - 14773159
Alignment:
| Q |
1 |
tattggttgcatagagctcagctgactaaatattaattttaggtctgatgagtcttcaaggaaggcatcatttgaactcttgttaaaaattgctcgtcat |
100 |
Q |
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| T |
14773414 |
tattggttgcatagagctcagctgactaaatattaattttaggtctgatgagacttcaaggaaggcatcatctgaactcttgttaaaaattgctcgtcat |
14773315 |
T |
|
| Q |
101 |
ggagaagacactggttttcaggtaccctgtcttatagttgtagctaaagatgatcaagattcatttacaatggctatccaagaggcaactatggtatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14773314 |
ggagaagacactggttttcaggtaccctgtcttatagttgtagctaaagatgatcaagattcatttacaatggctatccaagaggcaactatggtatttt |
14773215 |
T |
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| Q |
201 |
tcattattttatctatctgcattgtcatatacgtaattgtacatgcatattgatgt |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14773214 |
tcattattttatctatctgcattgtcatatacgtaattgtacatgcatattgatgt |
14773159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 15014800 - 15014567
Alignment:
| Q |
16 |
gctcagctgactaaatattaattttaggtctgatgagtcttcaaggaaggcatcatttgaactcttgttaaaaattgctcgtcatggagaagacactggt |
115 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| ||||| |||||| ||||||||||| |||||||||| |||||||||||||||| || |
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| T |
15014800 |
gctcagctgactaaatattaattttaggtctgat---tcttcatggaagacatcatctgaactcttgtcaaaaattgctggtcatggagaagacaccggc |
15014704 |
T |
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| Q |
116 |
tttcaggtaccctgtcttatagttgtagctaaagatgatcaagattcatttacaatggctatccaagaggcaactatggtatttttcattattttatcta |
215 |
Q |
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| T |
15014703 |
tttcaggtgccctgtcttacagttgcagttaatgatgatcaggattcatttacaatggctatacaagagacaactatggtatttttcattattttattca |
15014604 |
T |
|
| Q |
216 |
tctgcattgtcatatacgtaattgtacatgcatattg |
252 |
Q |
| |
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| || || |||||||| |||||| |||||||||||| |
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| T |
15014603 |
tttgaatgatcatatacataattgaacatgcatattg |
15014567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 15047564 - 15047326
Alignment:
| Q |
16 |
gctcagctgactaaatattaattttaggtctgatgagtcttcaaggaaggcatcatttgaactcttgttaaaaattgctcgtcatggagaagacactggt |
115 |
Q |
| |
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||||| |||||||| |||| || | |||||||| ||||||||| |||||||||| | ||| |||||||||||||| | | | || || ||||| ||||| |
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| T |
15047564 |
gctcaactgactaattattcatctcaggtctgacgagtcttcatggaaggcatcgtatgagctcttgttaaaaatcgttagacacggggaagatactggc |
15047465 |
T |
|
| Q |
116 |
tttcaggtaccctgtcttatagttgtagctaaagatgatcaagattcatttacaatggctatccaagaggcaactatggtatttttcattattttatcta |
215 |
Q |
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| T |
15047464 |
tttcaggtgccttgtcttatggtagcagctaaagatgataaagattcatttacaatggttatagaagaagaaactacagtatttttcattcacttattcc |
15047365 |
T |
|
| Q |
216 |
tctgcattgtcatatacgtaattgtacatgcatattgat |
254 |
Q |
| |
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| T |
15047364 |
tttgcatgttcatattcataattctacatgcatattgat |
15047326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 17879839 - 17879644
Alignment:
| Q |
13 |
agagctcagctgactaaatattaatttta--ggtctgatgagtcttcaaggaaggcatcatttgaactcttgttaaaaattgctcgtcatggagaagaca |
110 |
Q |
| |
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|||||| ||||||||| ||||| || ||| ||||||||||||||||| || | || ||| |||||||||| ||||||||||| |||||| | | |
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| T |
17879839 |
agagcttagctgactagatattcatcttataggtctgatgagtcttcatgggatgctgcatatgaactcttggtaaaaattgctgagcatggaacttata |
17879740 |
T |
|
| Q |
111 |
ctggttttcaggtaccctgtcttatagttgtagctaaagatgatcaagattcatttacaatggctatccaagaggcaactatggtatttttcatta |
206 |
Q |
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| T |
17879739 |
ctggctttgagatgccttgtcttatggtggcagctaaagatgataaggattcatttacaatgggtatacgagaaacgactggggtatttttcatta |
17879644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 51365658 - 51365480
Alignment:
| Q |
22 |
ctgactaaatattaattttaggtctgatgagtcttcaaggaaggcatcatttgaactcttgttaaaaattgctcgtcatggagaagacactggttttcag |
121 |
Q |
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||||||||||||| ||||||||||| ||||||| ||| |||||||||| | | ||||| | || |||||||||||||||||||| | ||||| ||| || |
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| T |
51365658 |
ctgactaaatattcattttaggtctaatgagtcctcatggaaggcatcgtctaaactccttgtagaaattgctcgtcatggagaacatactggctttaag |
51365559 |
T |
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| Q |
122 |
gtaccctgtcttatagttgtagctaaagatgatcaagattcatttacaatggctatccaagaggcaactatggtatttt |
200 |
Q |
| |
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|| ||||| |||||||||| |||||||||||| || |||||||| |||||||| | |||||| |||||| |||||||| |
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| T |
51365558 |
gtgccctgccttatagttgcagctaaagatgaccagtattcatttccaatggctgtacaagagtcaactagggtatttt |
51365480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 204
Target Start/End: Original strand, 53868932 - 53869070
Alignment:
| Q |
66 |
catcatttgaactcttgttaaaaattgctcgtcatggagaagacactggttttcaggtaccctgtcttatagttgtagctaaagatgatcaagattcatt |
165 |
Q |
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|||||| ||||||| | || ||||||||||||| |||||||| | ||| ||| |||| || || |||||||||| |||||||||||| || |||||||| |
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| T |
53868932 |
catcatctgaactccttgtagaaattgctcgtcacggagaagataatggctttgaggtgccttgccttatagttgcagctaaagatgaacaggattcatt |
53869031 |
T |
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| Q |
166 |
tacaatggctatccaagaggcaactatggtatttttcat |
204 |
Q |
| |
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| ||||||||| |||||| ||||| |||||||||||| |
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| T |
53869032 |
tccaatggctacacaagagttaactagggtatttttcat |
53869070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 54158368 - 54158187
Alignment:
| Q |
25 |
actaaatattaattttaggtctgatgagtcttcaaggaaggcatcatttgaact-cttgttaaaaattgctcgtcatggagaagacactggttttcaggt |
123 |
Q |
| |
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|||||||||| ||| ||||||||||||||| ||| ||| |||||||| | |||| ||||| | | |||||| |||||||||||| |||| ||| |||| |
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| T |
54158368 |
actaaatatttattgtaggtctgatgagtcctcatggagggcatcatctaaacttcttgt-agatattgctgctcatggagaagattctggctttgaggt |
54158270 |
T |
|
| Q |
124 |
accctgtcttatagttgtagctaaagatgatcaagattcatttacaatggctatccaagaggcaactatggtatttttcatta |
206 |
Q |
| |
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|| || |||||||||| ||||||||||| || | |||||||||||||||| |||||| | |||| |||| ||||||||| |
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| T |
54158269 |
gccttgccttatagttgctgctaaagatgaccaggtttcatttacaatggctgcacaagagtctactagggtaattttcatta |
54158187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 36877159 - 36877393
Alignment:
| Q |
6 |
gttgcatagagctcagctgactaaatattaattttaggtctgatgagtcttcaaggaaggcatcatttgaactcttgttaaaaattgctcgtcatggaga |
105 |
Q |
| |
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|||| ||| |||| |||||| |||| ||| ||||||||||||||||||||||| ||| | ||||| ||| |||||| || | |||||| |||||||||| |
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| T |
36877159 |
gttgtataaagcttagctgattaaaaatttattttaggtctgatgagtcttcatggagagtatcatatgatctcttggtacagattgctggtcatggaga |
36877258 |
T |
|
| Q |
106 |
agacactggttttcaggtaccctgtcttatagttgtagctaaagatgatcaagattcatttacaatggctatccaagaggcaactatggtatttttcatt |
205 |
Q |
| |
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| | ||||| | | |||| |||||||||||||||| |||||| ||||||| ||| ||||| || ||||||| |||||| |||||| |||||||||| || |
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| T |
36877259 |
aaatactggctatgaggtgccctgtcttatagttgcagctaaggatgatctggatccatttgcattggctatacaagagtcaactagggtatttttcgtt |
36877358 |
T |
|
| Q |
206 |
attttatctatctgcattgtcatatacgtaattgt |
240 |
Q |
| |
|
| |||| || ||||| |||||||| ||||||| |
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|
| T |
36877359 |
aacttattaatttgcatgatcatatacataattgt |
36877393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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