View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8280_high_7 (Length: 248)
Name: NF8280_high_7
Description: NF8280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8280_high_7 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 40881346 - 40881118
Alignment:
| Q |
20 |
acaaacacacacactcatggtatgaaagtaacatacagcaaggccaacagctccaagtccaaagatagcaacagaagaaccgggtttcggtttagcaaca |
119 |
Q |
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| T |
40881346 |
acaaacacacacactcatggtatgaaagtaacatacagcaaggccaacagctccaagtccaaagatagcaacagaagaaccgggtttcggtttagcaaca |
40881247 |
T |
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| Q |
120 |
ttgatggtagcaccaagacctacgaccatgaatgcaaattgaattaggaaatcatatactcaacctagttatatattaatatctcaatgcaagcatatat |
219 |
Q |
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| T |
40881246 |
ttgatggtagcaccaagacctaagaccatgaatgcaaattgaattaggaaatcatatactcaacctagttatatattaatatctcaatgcaaggatatat |
40881147 |
T |
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| Q |
220 |
tatacactacttggataaacagcttaatt |
248 |
Q |
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| T |
40881146 |
tatacactacttggataaacagcttaatt |
40881118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 40904551 - 40904373
Alignment:
| Q |
26 |
acacacactcatggtatgaaagtaacatacagcaaggccaacagctccaagtccaaagatagcaacagaagaaccgggtttcggtttagcaacattgatg |
125 |
Q |
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| T |
40904551 |
acacacacacaagatatgagagtaacatacagcaaggccaacagctccaagtccaaagatagcgacagaagaaccgggttttggtttagcaacattgata |
40904452 |
T |
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| Q |
126 |
gtagcaccaagacc--tacgaccatgaatgcaaattgaattaggaaatcatatactcaacctagttatatattaatatc |
202 |
Q |
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| T |
40904451 |
gtagcaccaagacctatagaagtatggaagcaaattgaattacgaaaacatagactcatcctagttatatgttaatatc |
40904373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 40899982 - 40899806
Alignment:
| Q |
29 |
cacactcatggtatgaaagtaacatacagcaaggccaacagctccaagtccaaagatagcaacagaagaaccgggtttcggtttagcaacattgatggta |
128 |
Q |
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| T |
40899982 |
cacactcaaggtataagagtaacataccgcaagcccaacagctccaaggccaaagatagcaacagatgaaccgggttttggtttagctacattgatagta |
40899883 |
T |
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| Q |
129 |
gcaccaagacc--tacgaccatgaatgcaaattgaattaggaaatcatatactcaacctagttatatattaatatct |
203 |
Q |
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| T |
40899882 |
gcaccaagacctgtaaaagcatggaagcaaattgaattagagaaacatagactcagcctaattatatataaatatct |
40899806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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