View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8280_low_1 (Length: 465)

Name: NF8280_low_1
Description: NF8280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8280_low_1
NF8280_low_1
[»] chr3 (3 HSPs)
chr3 (14-237)||(1345918-1346143)
chr3 (278-448)||(1346184-1346355)
chr3 (66-183)||(7577042-7577161)
[»] chr8 (3 HSPs)
chr8 (14-198)||(14721785-14721971)
chr8 (66-195)||(12220055-12220185)
chr8 (68-195)||(28185925-28186053)
[»] chr7 (1 HSPs)
chr7 (89-198)||(10011274-10011384)
[»] chr2 (1 HSPs)
chr2 (75-198)||(24187053-24187177)
[»] chr1 (1 HSPs)
chr1 (75-198)||(19282139-19282263)
[»] scaffold0416 (1 HSPs)
scaffold0416 (105-168)||(339-403)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 1345918 - 1346143
Alignment:
Q  14 tgagaagaagtgcc-agtcttccttggaattcaataagtctcaacagagttctagatttgttgattcattaagagtagagagagatataatgcctaatcc 112  Q
    |||||||||||||| | |||||||| ||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||    
T  1345918 tgagaagaagtgcccaatcttccttagaattgaataagtctcaacagagttttaaatttgttgattcattaagagtagagagagatctaatgcctaatcc 1346017  T
Q  113 accttcaaagagaggctttcaagattttttcaagaaatagtcactaattttctttttgaaacatcaccactccaaatgaaatttctcat-caaatttcaa 211  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||    
T  1346018 accttcaaagagaggcttgcaagatttttccaagaaatagtcactaattttctttttgaaacatcaccactccaaatgaaatttcttgtccaaatttcaa 1346117  T
Q  212 tgaacatgtttaactgaaatttattg 237  Q
    |||||||||||||||||| |||||||    
T  1346118 tgaacatgtttaactgaattttattg 1346143  T

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Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 278 - 448
Target Start/End: Original strand, 1346184 - 1346355
Alignment:
Q  278 gaacttgtttacttgaaaatgca-agctaggttatagaaaggaaaacgatgtacatgaagggaaaaaagaaggttacctcctgaagaactgttaaagatc 376  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||| || ||||||||||||||||||||||||| || ||||||||||||||    
T  1346184 gaacttgtttacttgaaaatgcatagctaggttatagaaaggaaaatgatgtagataaagggaaaaaagaaggttacctcctcaaaaactgttaaagatc 1346283  T
Q  377 aaaccagttttgaagttgaagaacttgagctctaataataaaatgaaagatatgattaaaaaattggaaagt 448  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1346284 aaaccggttttgaagttgaagaacttgagctctaataataaaatgaaagatatgattaaaaaattggaaagt 1346355  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 66 - 183
Target Start/End: Complemental strand, 7577161 - 7577042
Alignment:
Q  66 agatttgttgattcattaagagtagagagagatataatgcctaatccaccttcaaagagaggctttcaagatttttt--caagaaatagtcactaatttt 163  Q
    ||||| ||||||||||||||| | ||||||||  | |||||||| ||||||||  |||||||||| |||||||||||  ||||||| |||| ||||||||    
T  7577161 agattagttgattcattaagaatggagagagacctgatgcctaagccaccttctgagagaggcttgcaagatttttttccaagaaacagtccctaatttt 7577062  T
Q  164 ctttttgaaacatcaccact 183  Q
    ||||| || |||||||||||    
T  7577061 cttttagagacatcaccact 7577042  T

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Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 14721971 - 14721785
Alignment:
Q  14 tgagaagaagtg-ccagtcttccttggaattcaataagtctcaacagagttctagatttgttgattcattaagagtagagagagatataatgcctaatcc 112  Q
    ||||||||| || ||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| |||| |||||||||||||    
T  14721971 tgagaagaaatgtccagtcttccttggaattcaataagtcccaacaaagttttagatttgttgattcattaagagtagagacagatctaatgcctaatcc 14721872  T
Q  113 accttcaaagagaggctttcaagatttttt-caagaaatagtcactaattttctttttgaaacatcaccactccaaatgaaatttct 198  Q
    ||||||| |||||||||| ||||||||||| || |||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14721871 accttcagagagaggcttgcaagattttttccatgaaacagtcactaattttctttttaaaacatcaccactccaaatgaaatttct 14721785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 195
Target Start/End: Original strand, 12220055 - 12220185
Alignment:
Q  66 agatttgttgattcattaagagtagagagagatataatgcctaatccaccttcaaagagaggctttcaagattttttc-aagaaatagtcactaattttc 164  Q
    ||||| ||||||||||||||| | ||||||||  | |||||||| ||||||||  |||||||||| |||||||||||| |||||| ||||||||||||||    
T  12220055 agattagttgattcattaagaatggagagagacctgatgcctaagccaccttctgagagaggcttgcaagattttttccaagaaacagtcactaattttc 12220154  T
Q  165 tttttgaaacatcaccactccaaatgaaatt 195  Q
    |||| || |||||||||||||| ||||||||    
T  12220155 ttttagagacatcaccactccatatgaaatt 12220185  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 68 - 195
Target Start/End: Original strand, 28185925 - 28186053
Alignment:
Q  68 atttgttgattcattaagagtagagagagatataatgcctaatccaccttcaaagagaggctttcaagatttttt-caagaaatagtcactaattttctt 166  Q
    ||||||||||||||| ||| ||||||||||  | |||||||| ||||||||| |||||||||| ||||||||||| ||||||| ||||| || |||||||    
T  28185925 atttgttgattcatttagaatagagagagacctgatgcctaagccaccttcagagagaggcttgcaagattttttccaagaaacagtcaatagttttctt 28186024  T
Q  167 tttgaaacatcaccactccaaatgaaatt 195  Q
    || || |||||||||||||| ||||||||    
T  28186025 ttagagacatcaccactccatatgaaatt 28186053  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 10011384 - 10011274
Alignment:
Q  89 agagagagatataatgcctaatccaccttcaaagagaggctttcaagattttttc-aagaaatagtcactaattttctttttgaaacatcaccactccaa 187  Q
    |||||||||| |||| ||||| || |||||| | | ||||||||| | ||||||| ||||||  ||||| ||||||||||| |||| |||||||||||||    
T  10011384 agagagagatctaatccctaaacccccttcagataaaggctttcaggtttttttccaagaaactgtcaccaattttcttttggaaatatcaccactccaa 10011285  T
Q  188 atgaaatttct 198  Q
    |||||||||||    
T  10011284 atgaaatttct 10011274  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 198
Target Start/End: Original strand, 24187053 - 24187177
Alignment:
Q  75 gattcattaagagtagagagagatataatgcctaatccaccttcaaagagaggctttcaagattttttc-aagaaatagtcactaattttctttttgaaa 173  Q
    |||||||| |||  |||||||||| |||| ||||| || |||||| | | |||||| || | ||| ||| ||||||  ||||| ||||||||||| ||||    
T  24187053 gattcattgagaagagagagagatctaatccctaaacccccttcagataaaggcttacaggttttattccaagaaactgtcaccaattttcttttggaaa 24187152  T
Q  174 catcaccactccaaatgaaatttct 198  Q
     ||||||||||||||||||||||||    
T  24187153 tatcaccactccaaatgaaatttct 24187177  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 198
Target Start/End: Original strand, 19282139 - 19282263
Alignment:
Q  75 gattcattaagagtagagagagatataatgcctaatccaccttcaaagagaggctttcaagattttttc-aagaaatagtcactaattttctttttgaaa 173  Q
    |||||||| ||| ||  ||||||| |||| ||||| || |||||  | | |||||| |||| ||||||| |||||| |||||| ||||||||||| | ||    
T  19282139 gattcattgagaataatgagagatttaatccctaaacccccttcggataaaggcttgcaagtttttttccaagaaacagtcaccaattttcttttggcaa 19282238  T
Q  174 catcaccactccaaatgaaatttct 198  Q
     |||||||||||| |||||||||||    
T  19282239 tatcaccactccatatgaaatttct 19282263  T

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Target: scaffold0416 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 339 - 403
Alignment:
Q  105 cctaatccaccttcaaagagaggctttcaagatttt-ttcaagaaatagtcactaattttctttt 168  Q
    ||||||||||||||| ||||||| || ||||||||| | || |||| ||| ||||||||||||||    
T  339 cctaatccaccttcagagagaggtttccaagattttctccaggaaacagttactaattttctttt 403  T

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