View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8280_low_2 (Length: 354)
Name: NF8280_low_2
Description: NF8280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8280_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 11174357 - 11174072
Alignment:
| Q |
16 |
aatttcactggtggaagatctgatcagaggtttataggggggactagtggtaaccaaactcctacggtgcaagagccgattgtagcggaacctgaggctg |
115 |
Q |
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| T |
11174357 |
aatttcactggtggaagatctgatcagaggtttataggggggactagtggtaaccaaactcctacggtgcaagagccggttgtagcggaacctgaggctg |
11174258 |
T |
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| Q |
116 |
tggtggaggaaaacaaagagtgggtggctgaggtggagccgggagttgatgttacctttttgtctcttcctgatggtggaaatgatctcaagcgaattcg |
215 |
Q |
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| T |
11174257 |
tggtggaggaaaacagagagtgggtggctgaggtggagccgggagttgatgttacctttttgtctcttcctgatggtggaaatgatctcaagcgaattcg |
11174158 |
T |
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| Q |
216 |
cttcaagtatgtttaaaaactattacaagctttgattatttttacttgtttagttctatttaatatattgacacatacacaaacac |
301 |
Q |
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| T |
11174157 |
cttcaagtatgtttaaaaactattacaagctttgattatttttacttgtttagttctatttaatatattgacacatacacaaacac |
11174072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 6969065 - 6969108
Alignment:
| Q |
311 |
taaaaccattttgcaagagtaaaagtccccaactcatcaaaccc |
354 |
Q |
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| T |
6969065 |
taaaaccattttgcaagagttaaagtccccaactcatcaaaccc |
6969108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 30221417 - 30221488
Alignment:
| Q |
154 |
ccgggagttgatgttacctttttgtctcttcctgatggtggaaatgatctcaagcgaattcgcttcaagtat |
225 |
Q |
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| T |
30221417 |
ccgggggttcatattacctttgtgtctcttcctaatggtggaaatgatctcaagagaattcgcttcaggtat |
30221488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 18968429 - 18968504
Alignment:
| Q |
128 |
acaaagagtgggtggctgaggtggagccgggagttgatgttacctttttgtctcttcctgatggtggaaatgatct |
203 |
Q |
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| T |
18968429 |
acaaggagtggttggcgcaggtggagcgaggggttgatgttatctttgtctctcttcctaatggtggaaatgatct |
18968504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 19005929 - 19006024
Alignment:
| Q |
133 |
gagtgggtggctgaggtggagccgggagttgatgttacctttttgtctcttcctgatggtggaaatgatctcaagcgaattcgcttcaagtatgtt |
228 |
Q |
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| T |
19005929 |
gagtgggtggcataggtggagccaggggctgatgttatctttgtgtatcttcttattggtggaaatgatctaagaagaattcacttcaagtatgtt |
19006024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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