View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8280_low_3 (Length: 322)
Name: NF8280_low_3
Description: NF8280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8280_low_3 |
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| [»] chr1 (10 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 322
Target Start/End: Complemental strand, 9230170 - 9229859
Alignment:
| Q |
12 |
tattattctatctgtggctagttcatcgttgtacatgttatatcaaagaagaaaactcttgaaactaaaagagaaattctttaaacaaaatggcggtttc |
111 |
Q |
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| T |
9230170 |
tattattctatctgtggctagttcctcgttgtacatgttatatcaaagaagaaaactcttgaaactaaaagagaaattctttaaacaaaatggcggtttc |
9230071 |
T |
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| Q |
112 |
attttgctacgccaactttctaaaagagaag-cgcatcaggaactgctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggaga |
210 |
Q |
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| T |
9230070 |
attttgctacgccaactttctaaaagagaagacgcatcaggaactactcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggaga |
9229971 |
T |
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| Q |
211 |
gtttaataattggcagaggaggtttcggtacggtttacaaaggaattctagcagacaacaggattgttgcaatcaagaagtccaaaataatggatgccac |
310 |
Q |
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| T |
9229970 |
gtttaataattggcagaggaggtttcggtacggtttacaaaggaattctagcagacaacaggattgttgcaatcaagaagtccaaaataatggatgccac |
9229871 |
T |
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| Q |
311 |
ccaagtagagca |
322 |
Q |
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|||||||||||| |
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| T |
9229870 |
ccaagtagagca |
9229859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 9171057 - 9170959
Alignment:
| Q |
156 |
gctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaagga |
254 |
Q |
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| T |
9171057 |
gctcaaatattcacagaagaggaacttaagaaagccaccaaaaactacgatgaaagcttaatcattggcagaggaggttttggtacagtttacaaagga |
9170959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 9179039 - 9178941
Alignment:
| Q |
156 |
gctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaagga |
254 |
Q |
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|||||||| |||| |||||| |||||||||||||| ||||| ||||| || || || ||||| ||||||||||||||||| ||||| |||||||||||| |
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| T |
9179039 |
gctcaaatattcacagaagaggaacttaagaaagccaccaaaaactacgatgaaagcttaatcattggcagaggaggttttggtacagtttacaaagga |
9178941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 254
Target Start/End: Original strand, 9118114 - 9118319
Alignment:
| Q |
50 |
tatatcaaagaagaaaactcttgaaactaaaagagaaattctttaaacaaaatggcggtttcattttgctacgccaactttctaaaagagaag-cgcatc |
148 |
Q |
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|||| |||| |||||||||| | ||||||||| | ||||||||| |||||||||| |||||||||||||||| |||| | || |||||||| | | || |
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| T |
9118114 |
tataccaaaaaagaaaactcatcaaactaaaacaaaaattctttcaacaaaatggtggtttcattttgctacaaaaactctttacaagagaagacacgtc |
9118213 |
T |
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| Q |
149 |
aggaactgctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttac |
248 |
Q |
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| T |
9118214 |
tcaatcagctcagatattcacagaaaaggaacttaaaaaagctaccaacagctacgacgaaagcttaatcattggaagaggaggtttcggtacaattttc |
9118313 |
T |
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| Q |
249 |
aaagga |
254 |
Q |
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|||||| |
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| T |
9118314 |
aaagga |
9118319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 254
Target Start/End: Complemental strand, 9156391 - 9156221
Alignment:
| Q |
85 |
aaattctttaaacaaaatggcggtttcattttgctacgccaactttctaaaagagaag-cgcatcaggaactgctcaaattttcaaagaagatgaactta |
183 |
Q |
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||||||||| |||||||||| |||| ||||||||||| ||||| |||| |||||||| | | || | | ||| |||| |||| ||||| ||||||| |
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| T |
9156391 |
aaattctttcaacaaaatggtggttccattttgctacaacaactatctacaagagaagacacctcgcaatcagctgaaatattcactgaagaggaactta |
9156292 |
T |
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| Q |
184 |
agaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaagga |
254 |
Q |
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| T |
9156291 |
agaaagccaccaaaaactacgatgaaaacttaatcattggcagaggaggttttggtacagttttcaaagga |
9156221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 156 - 253
Target Start/End: Complemental strand, 1816406 - 1816309
Alignment:
| Q |
156 |
gctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaagg |
253 |
Q |
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||||| |||||||||||| ||||||| | ||||||||| ||||||| ||| ||||| ||||| || || ||||||||||| ||||| |||| |||||| |
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| T |
1816406 |
gctcacattttcaaagaaaatgaactaaggaaagctactaacaactttgatgagagcttaatcataggtagaggaggttttggtacagttttcaaagg |
1816309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 257
Target Start/End: Complemental strand, 9219242 - 9219039
Alignment:
| Q |
55 |
caaagaagaaaactcttgaaactaaaagagaaattctttaaacaaaatggcggtttcattttgctacgccaactttctaaaagagaag-cgcatcaggaa |
153 |
Q |
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|||| ||| |||||| | |||||||| | ||||||||| |||||||||| |||| |||||||||| ||||| || | |||||||| | | || | |
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| T |
9219242 |
caaaaaaggaaactcatcaaactaaagcaaaaattctttcaacaaaatggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaat |
9219143 |
T |
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| Q |
154 |
ctgctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaagg |
253 |
Q |
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| T |
9219142 |
cagctcaaatattcacggaagaggaacttaagaaagccaccaaaaactacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaagg |
9219043 |
T |
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| Q |
254 |
aatt |
257 |
Q |
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|||| |
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| T |
9219042 |
aatt |
9219039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 9162231 - 9162133
Alignment:
| Q |
156 |
gctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaagga |
254 |
Q |
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|||||||| |||| |||||| ||||| |||||||| ||||| ||||| || || || ||||| || |||||||||||||| ||||| |||| ||||||| |
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| T |
9162231 |
gctcaaatattcacagaagaggaactaaagaaagccaccaaaaactacgatgatagcttaatcatcggcagaggaggttttggtacagttttcaaagga |
9162133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 254
Target Start/End: Complemental strand, 9200621 - 9200526
Alignment:
| Q |
159 |
caaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaagga |
254 |
Q |
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| T |
9200621 |
caaatattcacagaagaggaacttaagaaagccaccaaaaaatacgacgaaagcttaatcatcggtagaggaggttttggtacagtttacaaagga |
9200526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 1856639 - 1856735
Alignment:
| Q |
157 |
ctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaagg |
253 |
Q |
| |
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|||| |||||| ||||| ||||||| | |||||| || ||||| | ||| ||||| ||||| || || | ||||||||| ||||| ||||||||||| |
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| T |
1856639 |
ctcacattttcgaagaaaatgaactaaggaaagccactaacaaatttgatgagagcttaatcataggtaaaggaggttttggtacagtttacaaagg |
1856735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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