View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8280_low_8 (Length: 253)
Name: NF8280_low_8
Description: NF8280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8280_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 42 - 237
Target Start/End: Original strand, 1576034 - 1576229
Alignment:
| Q |
42 |
ttgctacagggagttgctggttcatgttggtgcttgttcgtgcttgcctaggttgtgcttgtatgatcacttgttgtgagccagaaatggttgattaaat |
141 |
Q |
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| T |
1576034 |
ttgctacagggagttgctggttcatgttggtgcttcttcgtgcttgccaaggttgtgcttgtatgatcacttgttgtgggccagaaatggttgattaaat |
1576133 |
T |
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| Q |
142 |
tgatcgcaataaacggttggtgtgagtgggtttgcaaattaccgtgttggcggttgagtccactacactttctaacatctttcagtggctttgttc |
237 |
Q |
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| T |
1576134 |
tgatcgcagcaaacggttggtgtgagtggatttgcaaattactatgttggcggttgagtccactacactttcaagcatctttcagtggctttgttc |
1576229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 237
Target Start/End: Complemental strand, 27081465 - 27081287
Alignment:
| Q |
58 |
ctggttcatgttggtgcttgttcgtgcttgcctaggttgtgcttgtatgatcacttgttgtgagccagaaatggttgattaaattgatcgcaataaacgg |
157 |
Q |
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| T |
27081465 |
ctggttcatgttggtgcttgttcgtgtttgcctcggttgtgcttgtatgatcgcttgctaagggccagaaatggttgatttga-tcatcgtagtatacgg |
27081367 |
T |
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| Q |
158 |
ttggtgtgagtgggtttgcaaattaccgtgttggcggttgagtccactacactttctaacatctttcagtggctttgttc |
237 |
Q |
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| T |
27081366 |
ttggttcgcctgggttcgctaattactgttttggcggtcgaatccactccactttcaagcatctatttgtggctttgttc |
27081287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1575978 - 1576012
Alignment:
| Q |
1 |
ttatgtattatctatacaaattgagttaagcttac |
35 |
Q |
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| T |
1575978 |
ttatgcattatctatacaaattgagttaagcttac |
1576012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 3730376 - 3730428
Alignment:
| Q |
87 |
gcctaggttgtgcttgtatgatcacttgttgtgagccagaaatggttgattaa |
139 |
Q |
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| T |
3730376 |
gcctaggtagtgcttgtatgatcgcttgttgttggccagaaatggctgattaa |
3730428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 18464659 - 18464712
Alignment:
| Q |
86 |
tgcctaggttgtgcttgtatgatcacttgttgtgagccagaaatggttgattaa |
139 |
Q |
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| T |
18464659 |
tgcctaggttgtgcctgtatgttcgcttgatgtgggccagaaatggctgattaa |
18464712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 21292220 - 21292273
Alignment:
| Q |
86 |
tgcctaggttgtgcttgtatgatcacttgttgtgagccagaaatggttgattaa |
139 |
Q |
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| T |
21292220 |
tgcctagtttgtgcttgtatgatcgcttgatgtgggctagaaatggctgattaa |
21292273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 24316542 - 24316594
Alignment:
| Q |
85 |
ttgcctaggttgtgcttgtatgatcacttgttgtgagccagaaatggttgatt |
137 |
Q |
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| T |
24316542 |
ttgcctcggttgtgcttgtatgatctcttgttgtaggctagaaatggctgatt |
24316594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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