View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8281_high_1 (Length: 425)
Name: NF8281_high_1
Description: NF8281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8281_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 22 - 412
Target Start/End: Complemental strand, 7824670 - 7824295
Alignment:
| Q |
22 |
gtcggaaatcggtctgaaaacctcaatccgcacgaacccacggttggtaactatgaggccatttccgcccaaattcacagtcggtttactcggtttcggt |
121 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7824670 |
gtcggaaatcgatccgaaaacctcaatccgcacgaacccacggttggtaactatgaggccatttccgcccaaattcacagtcggtttactcggtttcggt |
7824571 |
T |
|
| Q |
122 |
taagtcgaataaagtggataatcgggtgggttcactcggttaattctaaaaggaacaannnnnnnnnaatcagcttatattatgtcgaccaaaattaaac |
221 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7824570 |
taagtcggataaagtggataatcgggtgggttcactcggttaattctaaaaggaacaatttttttttaatcagcttatattatgtcgaccaaaattaaac |
7824471 |
T |
|
| Q |
222 |
aagatgggggcaaggaggaaaaagcaaaaactaagagcctaactagcagtaaacccatagcaggaaacaaaagccaacacaaatggcatgctgcaaaaac |
321 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7824470 |
aagatgggggcaaggaggaaaaagaaaaaactaaga-------------taaa-ccatagcaggaaacaaaagccaacacaaatggcatgctgcaaaaac |
7824385 |
T |
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| Q |
322 |
agaagcagcaactactgctgatatnnnnnnnncagaaaaggataaactaatgtcctcttatgatgtttccattgatggttctgttgaaatt |
412 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7824384 |
agaagcaacaactactgctgatat-caaaaaacagaaaaggataaactaatgtcctcttatgatgtttccattgatggttctgttcaaatt |
7824295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 22564402 - 22564553
Alignment:
| Q |
13 |
tggacatcagtcggaaatcggtctgaaaacctcaatccgcacgaacccacggttggtaactatgaggccatttccgcccaaattcacagtcggtttactc |
112 |
Q |
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|||||||| |||||||||||||| |||||||| || ||| | | |||||||| | ||| | | ||||||||||||||| || |||||||| | |
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| T |
22564402 |
tggacatcggtcggaaatcggtccgaaaacctaaaaccgtccaagcccacggtctgaaaccaaaggtccatttccgcccaaactctatctcggtttagcc |
22564501 |
T |
|
| Q |
113 |
ggtttcggttaagtcgaataaagtggataatcgggtgggttcactcggttaa |
164 |
Q |
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|| ||||||| ||||| | ||| ||||||||||||||||||| |||||||| |
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| T |
22564502 |
ggattcggtttagtcggtttaagcggataatcgggtgggttcaatcggttaa |
22564553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 22 - 345
Target Start/End: Complemental strand, 18299554 - 18299223
Alignment:
| Q |
22 |
gtcggaaatcggtctgaaaacctcaatccgcacgaacccacggttggtaactatgaggccatttccgcccaaattcacagtcggtttactcggtttcggt |
121 |
Q |
| |
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|||||||||||||||||||| || ||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18299554 |
gtcggaaatcggtctgaaaatctaaatccgcacaaacccacagttggtaactatagagccatttccgcccaaattcacagtcggtttactcgatttcggt |
18299455 |
T |
|
| Q |
122 |
taagtcgaataaagtggataatcgggtgggttcactcggttaattct-aaaaggaacaannnnnnnnnaatcagcttatattatgtcgaccaaaattaaa |
220 |
Q |
| |
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|||||| || ||| || ||||||||||||||||||||||||||||| |||||| || ||||||||||| ||||||| |||||||||||| |
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| T |
18299454 |
taagtcagattaagcggttaatcgggtgggttcactcggttaattctaaaaagggctaatttttttttaatcagcttatgttatgtccaccaaaattaaa |
18299355 |
T |
|
| Q |
221 |
caagatg--------ggggcaaggaggaaaaagcaaaaactaagagcctaactagcagtaaacccatagcaggaaacaaaagccaacacaaa-tggcatg |
311 |
Q |
| |
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||||||| |||||| | |||||||||||||||| |||| ||||||||||||||| | |||| |||||||||||| ||||||||| || | || |
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| T |
18299354 |
caagatgtacaagatggggcatgaaggaaaaagcaaaaacgaagaacctaactagcagtaacctcata-taggaaacaaaag-caacacaaactgccctg |
18299257 |
T |
|
| Q |
312 |
ctgcaaaaacagaagcagcaactactgctgatat |
345 |
Q |
| |
|
|||||||| ||||| |||| || ||||||||| |
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| T |
18299256 |
ttgcaaaaatagaagtagcagttattgctgatat |
18299223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 23 - 252
Target Start/End: Complemental strand, 5382257 - 5382020
Alignment:
| Q |
23 |
tcggaaatcggtctgaaaacctcaatccgcacgaacccacggttggtaactatgaggccatttccgcccaaattcacagtcggtttactcggtttcggtt |
122 |
Q |
| |
|
||||||||||||| |||||||||||||||| | |||| | ||||||||||||| |||||||||||||||||||||||||||||||||| ||||| || |
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| T |
5382257 |
tcggaaatcggtccgaaaacctcaatccgcgcaaacctatggttggtaactatagagccatttccgcccaaattcacagtcggtttactcagtttctgtc |
5382158 |
T |
|
| Q |
123 |
aagtcgaataaagtggataatcgggtgggttcactcggttaattctaaaaggaacaannnnnnnnnaatcagcttatattatgtcgaccaaaattaaaca |
222 |
Q |
| |
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||||| || ||| || ||||||||||||||||||||||||||||||||| | | | ||||||||||| ||||||| |||||||||||||| |
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| T |
5382157 |
aagtcagattaagcggttaatcgggtgggttcactcggttaattctaaaaagggccaattttttttaatcagcttatgttatgtccaccaaaattaaaca |
5382058 |
T |
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| Q |
223 |
agatg--------ggggcaaggaggaaaaagcaaaaac |
252 |
Q |
| |
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||||| ||||||||||||||||||||||||| |
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| T |
5382057 |
agatgtacaagatggggcaaggaggaaaaagcaaaaac |
5382020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 341
Target Start/End: Original strand, 25967688 - 25967806
Alignment:
| Q |
228 |
ggggcaaggaggaaaaagcaaaaactaagagcctaactagcagtaaacccatagcaggaaacaaa----agccaacacaaatgg-catgctgcaaaaaca |
322 |
Q |
| |
|
|||||||||||||||||| ||| | ||| |||| ||||||||||| |||||| |||||| |||| |||||||||||| || | ||||||||||||| |
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| T |
25967688 |
ggggcaaggaggaaaaagaaaataaaaagggcctgactagcagtaaccccatatcaggaaccaaaaaacagccaacacaaacggccctgctgcaaaaaca |
25967787 |
T |
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| Q |
323 |
gaagcagcaactactgctg |
341 |
Q |
| |
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||||||||| ||||||||| |
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| T |
25967788 |
gaagcagcagctactgctg |
25967806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 12602565 - 12602517
Alignment:
| Q |
80 |
ccatttccgcccaaattcacagtcggtttactcggtttcggttaagtcg |
128 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||||||||||||||| |
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|
| T |
12602565 |
ccatttccgcccaaattctctatcggtttactcggtttcggttaagtcg |
12602517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 42102020 - 42102068
Alignment:
| Q |
80 |
ccatttccgcccaaattcacagtcggtttactcggtttcggttaagtcg |
128 |
Q |
| |
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|||||||||||||||||| | | ||||||||||||||||||||||||| |
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| T |
42102020 |
ccatttccgcccaaattctctattggtttactcggtttcggttaagtcg |
42102068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 9992437 - 9992390
Alignment:
| Q |
81 |
catttccgcccaaattcacagtcggtttactcggtttcggttaagtcg |
128 |
Q |
| |
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|||||| |||||||||| | ||||||||||||||||||||||||||| |
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| T |
9992437 |
catttctgcccaaattctctatcggtttactcggtttcggttaagtcg |
9992390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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