View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8281_high_2 (Length: 409)

Name: NF8281_high_2
Description: NF8281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8281_high_2
NF8281_high_2
[»] chr5 (15 HSPs)
chr5 (15-275)||(6796247-6796507)
chr5 (333-409)||(16594367-16594443)
chr5 (333-391)||(41173256-41173314)
chr5 (350-405)||(10008508-10008561)
chr5 (333-404)||(1981894-1981964)
chr5 (333-396)||(43441742-43441805)
chr5 (333-405)||(7287185-7287257)
chr5 (333-396)||(6517716-6517779)
chr5 (333-391)||(8920082-8920140)
chr5 (359-409)||(13739480-13739530)
chr5 (344-409)||(25603661-25603724)
chr5 (364-409)||(5899878-5899923)
chr5 (345-409)||(16967469-16967531)
chr5 (345-405)||(4088459-4088519)
chr5 (349-405)||(22098275-22098331)
[»] chr3 (28 HSPs)
chr3 (329-409)||(37143121-37143201)
chr3 (329-409)||(15927586-15927666)
chr3 (327-409)||(31425532-31425612)
chr3 (329-407)||(31931012-31931090)
chr3 (333-409)||(49875800-49875874)
chr3 (329-409)||(50886193-50886272)
chr3 (333-408)||(31350598-31350673)
chr3 (329-409)||(31664624-31664703)
chr3 (333-409)||(33389012-33389088)
chr3 (333-409)||(33976385-33976461)
chr3 (333-409)||(45293020-45293096)
chr3 (328-409)||(23553582-23553661)
chr3 (349-391)||(41448185-41448227)
chr3 (345-391)||(48353012-48353058)
chr3 (327-396)||(55399997-55400066)
chr3 (333-405)||(26452718-26452790)
chr3 (344-407)||(43898582-43898643)
chr3 (358-409)||(23553768-23553819)
chr3 (333-396)||(24482967-24483030)
chr3 (333-396)||(26996320-26996383)
chr3 (328-407)||(49021710-49021789)
chr3 (333-396)||(50206974-50207037)
chr3 (349-391)||(48335231-48335273)
chr3 (333-398)||(10811139-10811204)
chr3 (351-396)||(39629843-39629888)
chr3 (333-390)||(44963829-44963886)
chr3 (351-391)||(17550161-17550201)
chr3 (333-409)||(36639105-36639181)
[»] chr1 (22 HSPs)
chr1 (329-409)||(18982519-18982599)
chr1 (335-409)||(36775112-36775185)
chr1 (329-409)||(46859418-46859496)
chr1 (353-409)||(35414581-35414637)
chr1 (344-409)||(46039917-46039982)
chr1 (328-396)||(649767-649835)
chr1 (328-396)||(13489661-13489729)
chr1 (327-391)||(27465067-27465130)
chr1 (353-408)||(29936768-29936821)
chr1 (329-369)||(36775072-36775112)
chr1 (333-396)||(9566965-9567028)
chr1 (333-396)||(10890050-10890113)
chr1 (333-396)||(15705066-15705129)
chr1 (333-388)||(28501451-28501506)
chr1 (333-396)||(36577416-36577479)
chr1 (333-396)||(52362486-52362549)
chr1 (333-391)||(48983677-48983735)
chr1 (327-405)||(52437492-52437570)
chr1 (333-398)||(4213076-4213141)
chr1 (361-406)||(16583055-16583100)
chr1 (380-408)||(15067822-15067850)
chr1 (377-409)||(41411000-41411032)
[»] chr6 (19 HSPs)
chr6 (331-409)||(28982632-28982708)
chr6 (333-407)||(34383851-34383925)
chr6 (329-409)||(354276-354354)
chr6 (354-409)||(2204394-2204449)
chr6 (328-396)||(17181940-17182008)
chr6 (333-409)||(23632628-23632704)
chr6 (333-396)||(17551383-17551446)
chr6 (332-409)||(5456843-5456918)
chr6 (333-391)||(20029265-20029323)
chr6 (333-390)||(15368833-15368890)
chr6 (351-409)||(10729590-10729646)
chr6 (333-396)||(18141305-18141368)
chr6 (333-396)||(20822872-20822935)
chr6 (333-396)||(32046702-32046765)
chr6 (333-396)||(35213565-35213628)
chr6 (334-391)||(8747174-8747231)
chr6 (351-391)||(10840740-10840780)
chr6 (349-405)||(16337918-16337974)
chr6 (351-391)||(33683522-33683562)
[»] chr7 (16 HSPs)
chr7 (332-409)||(2819256-2819333)
chr7 (333-409)||(41750119-41750195)
chr7 (329-392)||(48814816-48814879)
chr7 (333-409)||(9792770-9792846)
chr7 (333-398)||(47448830-47448895)
chr7 (339-391)||(12233012-12233063)
chr7 (333-409)||(19223443-19223519)
chr7 (333-405)||(40854650-40854722)
chr7 (355-391)||(47925363-47925399)
chr7 (333-391)||(6427214-6427272)
chr7 (333-391)||(12007195-12007253)
chr7 (349-391)||(22588970-22589012)
chr7 (327-396)||(30941384-30941452)
chr7 (353-390)||(48314371-48314408)
chr7 (352-396)||(34820633-34820677)
chr7 (349-405)||(42584822-42584878)
[»] chr8 (19 HSPs)
chr8 (330-409)||(21514930-21515007)
chr8 (333-409)||(31266225-31266301)
chr8 (333-405)||(8671551-8671623)
chr8 (377-409)||(12172082-12172114)
chr8 (377-409)||(12416510-12416542)
chr8 (333-396)||(31596952-31597015)
chr8 (333-396)||(33100473-33100536)
chr8 (333-396)||(34718119-34718182)
chr8 (333-391)||(3946244-3946302)
chr8 (353-391)||(26629119-26629157)
chr8 (333-407)||(42733558-42733632)
chr8 (333-386)||(5771986-5772039)
chr8 (329-398)||(33451565-33451634)
chr8 (333-385)||(5771891-5771943)
chr8 (328-396)||(7598707-7598775)
chr8 (324-396)||(21526285-21526357)
chr8 (349-405)||(25830241-25830297)
chr8 (349-405)||(35067180-35067236)
chr8 (353-409)||(37379426-37379481)
[»] chr4 (13 HSPs)
chr4 (337-409)||(3698321-3698393)
chr4 (333-409)||(51734624-51734700)
chr4 (343-409)||(54128067-54128131)
chr4 (333-396)||(2268512-2268574)
chr4 (333-396)||(5932161-5932224)
chr4 (333-396)||(22819653-22819716)
chr4 (327-405)||(5932759-5932837)
chr4 (333-391)||(17367449-17367507)
chr4 (345-391)||(37514141-37514187)
chr4 (333-391)||(51255750-51255808)
chr4 (333-397)||(2004192-2004256)
chr4 (328-401)||(12706162-12706236)
chr4 (345-409)||(24772687-24772750)
[»] scaffold0034 (1 HSPs)
scaffold0034 (333-407)||(101899-101973)
[»] chr2 (17 HSPs)
chr2 (333-407)||(15260311-15260385)
chr2 (350-409)||(37468253-37468308)
chr2 (353-409)||(4969526-4969580)
chr2 (319-396)||(6999072-6999149)
chr2 (377-409)||(4285549-4285581)
chr2 (333-408)||(7438572-7438645)
chr2 (328-391)||(13765399-13765462)
chr2 (333-391)||(6170634-6170692)
chr2 (349-391)||(15610841-15610883)
chr2 (347-405)||(18737869-18737927)
chr2 (349-391)||(40874270-40874312)
chr2 (333-390)||(2563708-2563765)
chr2 (333-405)||(8427556-8427628)
chr2 (333-397)||(14871851-14871915)
chr2 (328-396)||(18723593-18723661)
chr2 (345-409)||(23344981-23345044)
chr2 (333-409)||(40210059-40210135)
[»] scaffold1625 (1 HSPs)
scaffold1625 (350-391)||(790-831)
[»] scaffold0432 (1 HSPs)
scaffold0432 (333-398)||(6522-6587)
[»] scaffold0481 (1 HSPs)
scaffold0481 (333-409)||(1192-1267)


Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 275
Target Start/End: Original strand, 6796247 - 6796507
Alignment:
Q  15 tcaatttcctggtcctagacttgatttgattactaataacaatgtgattctcaatcttgtcaacaagctagatgagccatttctactaacatggtgaggt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6796247 tcaatttcctggtcctagacttgatttgattactaataacaatgtgattctcaatcttgtcaacaagctagatgagccatttctactaacatggtgaggt 6796346  T
Q  115 tttatttatgnnnnnnngattcaatttctttgctttatgatctgcattgagtacctttatgtgtgtaaatcattgttttcaaaattggccagtttgtcag 214  Q
    ||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6796347 tttatttatgtttttttgattcaatttctttgctttatgatctgcattgagtacctttatatgtgtaaatcattgttttcaaaattggccagtttgtcag 6796446  T
Q  215 ctggtttgatcttgattgtattgcagtctggttgaactggattgaaccgtggttggttcca 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6796447 ctggtttgatcttgattgtattgcagtctggttgaactggattgaaccgtggttggttcca 6796507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 16594443 - 16594367
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||| | |||||||||||||||||||||||||| ||||| |||| ||||||||||||||| || |||||||||    
T  16594443 aatgatatttgaacatccattttttaacaacttttgtgacaactctctttctcatactctcattatatttttattct 16594367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 391
Target Start/End: Original strand, 41173256 - 41173314
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    |||||||| |||||||||||||| | |||||||||||||||||  ||||||||||||||    
T  41173256 aatgatatttaaacatccattttgtgacaacttttgtaacaactttctctctcatactc 41173314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 350 - 405
Target Start/End: Complemental strand, 10008561 - 10008508
Alignment:
Q  350 cattttttaacaacttttgtaacaaccctctctctcatactctcattgtactttta 405  Q
    ||||||| |||||||||||| |||||  ||||||||||||||||||||||||||||    
T  10008561 catttttaaacaacttttgtgacaac--tctctctcatactctcattgtactttta 10008508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 404
Target Start/End: Original strand, 1981894 - 1981964
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtactttt 404  Q
    |||||||| | |||| |||||||| |||| ||||||| |||||  |||||||||||||||||||||||||||    
T  1981894 aatgatatttgaacaaccatttttaaaca-cttttgtgacaactttctctctcatactctcattgtactttt 1981964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 43441742 - 43441805
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| | |||||||||||| |||||||||||| ||||||  |||||||||||||| ||||    
T  43441742 aatgatatttgaacatccattttgtaacaacttttgcaacaactttctctctcatactcacatt 43441805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 7287257 - 7287185
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtactttta 405  Q
    |||||||| |||||| ||||||||| ||||||||||| |||||  ||||| |||||||| |||| || |||||    
T  7287257 aatgatatttaaacaaccatttttttacaacttttgtgacaactttctctttcatactcacattatattttta 7287185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 6517716 - 6517779
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| | |||||||||||| | ||||||||||| |||||  |||||||||||||| ||||    
T  6517716 aatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactcacatt 6517779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 391
Target Start/End: Original strand, 8920082 - 8920140
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    |||||||| | |||||||||||| | ||||||||||| |||||  ||||||||||||||    
T  8920082 aatgatatttgaacatccattttgtgacaacttttgtgacaactttctctctcatactc 8920140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 409
Target Start/End: Original strand, 13739480 - 13739530
Alignment:
Q  359 acaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    ||||||||||| ||||| || |||||||||| |||||| ||||||||||||    
T  13739480 acaacttttgtgacaactctttctctcatacactcattatacttttattct 13739530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 409
Target Start/End: Complemental strand, 25603724 - 25603661
Alignment:
Q  344 aacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    ||||| ||||||||||| |||||||| ||||  |||||||  |||| |||||||||||||||||||    
T  25603724 aacattcattttttaacgacttttgtgacaa--ctctctcatatacactcattgtacttttattct 25603661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 5899923 - 5899878
Alignment:
Q  364 ttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||| |||||  ||||||||||||| ||||||||||||||||||    
T  5899923 ttttgtgacaactttctctctcatactttcattgtacttttattct 5899878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 409
Target Start/End: Complemental strand, 16967531 - 16967469
Alignment:
Q  345 acatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    ||||||| |||| |||||||||||| |||||  ||||| | ||||||||||| ||||||||||||    
T  16967531 acatccaattttcaacaacttttgtgacaac--tctcttttatactctcattatacttttattct 16967469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 4088459 - 4088519
Alignment:
Q  345 acatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtactttta 405  Q
    ||||||||||| ||||||||||||| |||||  ||||| |||||||| |||| || |||||    
T  4088459 acatccattttataacaacttttgtgacaactttctctttcatactcacattatattttta 4088519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 22098275 - 22098331
Alignment:
Q  349 ccattttttaacaacttttgtaacaaccctctctctcatactctcattgtactttta 405  Q
    ||||||| ||||||||||||| |||||  |||||||||||||| |||| || |||||    
T  22098275 ccattttctaacaacttttgtgacaactttctctctcatactcacattatattttta 22098331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 329 - 409
Target Start/End: Original strand, 37143121 - 37143201
Alignment:
Q  329 gagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37143121 gagtaatgatatttgaacatccattttttaacaacttttgtgacaaccctctctctcatactctcattgtacttttattct 37143201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 329 - 409
Target Start/End: Complemental strand, 15927666 - 15927586
Alignment:
Q  329 gagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    ||||||| |||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15927666 gagtaataatatttgaacatccattttttaacaacttttgtaacaactctctctctcatactctcattgtacttttattct 15927586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 327 - 409
Target Start/End: Original strand, 31425532 - 31425612
Alignment:
Q  327 tggagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||||||||| | |||||||||||||||||||||||||| |||| |   ||||||||||||||||||||||||||||||    
T  31425532 tggagtaatgatatttgaacatccattttttaacaacttttgtgacaatc--atctctcatactctcattgtacttttattct 31425612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 329 - 407
Target Start/End: Complemental strand, 31931090 - 31931012
Alignment:
Q  329 gagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttatt 407  Q
    |||||||||||| | |||||||||||||||||||||||||| ||||   ||||||||||||||| ||||||||||||||    
T  31931090 gagtaatgatatttgaacatccattttttaacaacttttgtgacaattttctctctcatactcttattgtacttttatt 31931012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 49875800 - 49875874
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||| | |||||||||||||||||||||||||| ||||  |||||||||||||||| ||||||||||||||||    
T  49875800 aatgatattttaacatccattttttaacaacttttgtgacaa--ctctctctcatactcttattgtacttttattct 49875874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 329 - 409
Target Start/End: Original strand, 50886193 - 50886272
Alignment:
Q  329 gagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||||||| | | |||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| |||||||||    
T  50886193 gagtaatgatatttgatcatccatttt-taacaacttttgtgacaacactctctctcatactctcattgtatttttattct 50886272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 333 - 408
Target Start/End: Complemental strand, 31350673 - 31350598
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattc 408  Q
    |||||||| | ||||||||||||||||||| |||||| ||||| ||||||||||||||||  ||||||||||||||    
T  31350673 aatgatattttaacatccattttttaacaatttttgtgacaactctctctctcatactcttgttgtacttttattc 31350598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 409
Target Start/End: Original strand, 31664624 - 31664703
Alignment:
Q  329 gagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||||||| | |||||||||||||||||||| ||||| ||||   ||||||||||||||| ||||||||||||||||    
T  31664624 gagtaatgatatttgaacatccattttttaacaac-tttgtgacaattttctctctcatactcttattgtacttttattct 31664703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 33389012 - 33389088
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||| | |||| ||| |||| ||||| |||||| |||||  ||||||||||||||||||| ||||||||||||    
T  33389012 aatgatatttgaacaaccacttttaaacaatttttgtgacaactttctctctcatactctcattatacttttattct 33389088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 33976461 - 33976385
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||| | |||||||||||| ||||||||||| | |||| ||||| | |||||||||||||||  |||||||||    
T  33976461 aatgatatttgaacatccattttgtaacaacttttatgacaatcctctttttcatactctcattgtttttttattct 33976385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 45293096 - 45293020
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||| |||||| | |||||| |||||||||||| |||||  |||||||||||||| |||| || |||||||||    
T  45293096 aatgatatttaaacaactatttttaaacaacttttgtgacaactttctctctcatactcacattatatttttattct 45293020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 328 - 409
Target Start/End: Complemental strand, 23553661 - 23553582
Alignment:
Q  328 ggagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||| |||||||| | |||| | | |||| |||||||||||| |||||  ||||||||||||||| ||||||||||||||||    
T  23553661 ggagaaatgatatttgaacaactacttttaaacaacttttgtgacaac--tctctctcatactcttattgtacttttattct 23553582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 41448227 - 41448185
Alignment:
Q  349 ccattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    |||||||| ||||||||||| ||||||||||||||||||||||    
T  41448227 ccatttttaaacaacttttgaaacaaccctctctctcatactc 41448185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 48353012 - 48353058
Alignment:
Q  345 acatccattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    ||||||||||||||||||||||||| |||||  ||||||||||||||    
T  48353012 acatccattttttaacaacttttgtgacaactttctctctcatactc 48353058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 396
Target Start/End: Original strand, 55399997 - 55400066
Alignment:
Q  327 tggagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    ||||| |||||||| | |||||||||||| | ||||||||||| |||||  |||||||||||||| ||||    
T  55399997 tggagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactcacatt 55400066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 26452790 - 26452718
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtactttta 405  Q
    |||||||| || ||| ||||||| ||||||||||||| |||||  |||||||||||||| |||| || |||||    
T  26452790 aatgatatatatacaaccattttctaacaacttttgttacaactttctctctcatactcacattatattttta 26452718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 407
Target Start/End: Original strand, 43898582 - 43898643
Alignment:
Q  344 aacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttatt 407  Q
    |||| ||| |||| |||||||||||| |||||  ||||||||||||||||||| ||||||||||    
T  43898582 aacaaccaattttaaacaacttttgtgacaac--tctctctcatactctcattatacttttatt 43898643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 23553819 - 23553768
Alignment:
Q  358 aacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||||||| |||||  ||||||||||||||||||| || |||||||||    
T  23553819 aacaacttttgtgacaactttctctctcatactctcattctatttttattct 23553768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 24483030 - 24482967
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| | |||||||||||| | |||||||||| ||||||  |||||||||||||| ||||    
T  24483030 aatgatatttgaacatccattttgtgacaacttttgcaacaactttctctctcatactcacatt 24482967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 26996320 - 26996383
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| | ||||| |||||  |||||||||||||||||||  |||||||||||||| ||||    
T  26996320 aatgatatttgaacattcatttagtaacaacttttgtaacaactttctctctcatactcacatt 26996383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 407
Target Start/End: Original strand, 49021710 - 49021789
Alignment:
Q  328 ggagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttatt 407  Q
    |||| |||||||| |  ||||||||||||||| ||||||||| |||||  ||| |||||||||| |||| || |||||||    
T  49021710 ggagaaatgatatttgtacatccattttttaataacttttgtgacaactttctttctcatactcacattatatttttatt 49021789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 50207037 - 50206974
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| | |||||||||||| | |||||||||| ||||||  |||||||||||||| ||||    
T  50207037 aatgatatttgaacatccattttgtgacaacttttgcaacaactttctctctcatactcacatt 50206974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 48335231 - 48335273
Alignment:
Q  349 ccattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    |||||||||||||||||||| || |||| ||||||||||||||    
T  48335231 ccattttttaacaacttttggaataaccttctctctcatactc 48335273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 10811139 - 10811204
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgt 398  Q
    |||||||| | |||| ||||||| | ||||||||||| |||||  |||||||||||||| ||||||    
T  10811139 aatgatatttgaacaaccattttatgacaacttttgtgacaactttctctctcatactcacattgt 10811204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 396
Target Start/End: Complemental strand, 39629888 - 39629843
Alignment:
Q  351 attttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    ||||||| ||||||||||| |||||| |||||||||||||| ||||    
T  39629888 atttttttacaacttttgtgacaaccttctctctcatactcacatt 39629843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 44963886 - 44963829
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatact 390  Q
    |||||||||| ||||  |||||| ||||||||||||| |||||  |||||||||||||    
T  44963886 aatgatatctgaacaatcattttctaacaacttttgtgacaactttctctctcatact 44963829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 17550161 - 17550201
Alignment:
Q  351 attttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    ||||||||||||||||||| |||||  ||||||||||||||    
T  17550161 attttttaacaacttttgttacaactttctctctcatactc 17550201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 36639105 - 36639181
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||| | |||| ||||||||  |||| ||| || ||||| |||||| |||||||  |||||||||||||||||    
T  36639105 aatgatatttgaacaaccatttttatacaattttggtgacaacactctctatcatacttacattgtacttttattct 36639181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 329 - 409
Target Start/End: Original strand, 18982519 - 18982599
Alignment:
Q  329 gagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  18982519 gagtaatgatatttgaacatccattttttaacaacttttgtgacaaccctctctctcatactcttattgtatttttattct 18982599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 335 - 409
Target Start/End: Original strand, 36775112 - 36775185
Alignment:
Q  335 tgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||| | |||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||    
T  36775112 tgatatttgaacatccattttttaacaacttttgtgacaaccctctctctcat-ctcttattgtacttttattct 36775185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 329 - 409
Target Start/End: Original strand, 46859418 - 46859496
Alignment:
Q  329 gagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||||||| | | |||||||||||||||||||||||| ||||  ||||||||||||||||||||||| |||||||||    
T  46859418 gagtaatgatatttgagcatccattttttaacaacttttgtgacaa--ctctctctcatactctcattgtaattttattct 46859496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 353 - 409
Target Start/End: Complemental strand, 35414637 - 35414581
Alignment:
Q  353 tttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||||||||| || ||||| ||||||||||||||| |||||||||||||||||    
T  35414637 tttttaacaactttggtgacaactctctctctcatactcacattgtacttttattct 35414581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 409
Target Start/End: Original strand, 46039917 - 46039982
Alignment:
Q  344 aacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    ||||| ||||||| |||||||||||| | ||   |||||||||||||||||||||| |||||||||    
T  46039917 aacattcatttttaaacaacttttgtgataaatttctctctcatactctcattgtatttttattct 46039982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 396
Target Start/End: Original strand, 649767 - 649835
Alignment:
Q  328 ggagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||| |||||||| | |||| ||||||||| ||||||||||| |||||  |||||||||||||| ||||    
T  649767 ggagaaatgatatttgaacaaccatttttttacaacttttgtgacaactttctctctcatactcacatt 649835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 396
Target Start/End: Original strand, 13489661 - 13489729
Alignment:
Q  328 ggagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||| |||||||| | |||||||||||| | ||||||||||| |||||  |||||||||||||| ||||    
T  13489661 ggagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactcacatt 13489729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 27465130 - 27465067
Alignment:
Q  327 tggagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    ||||| |||||||| |||||| |||||||||| |||||||||| |||||  ||||||||||||||    
T  27465130 tggagaaatgatatttaaacaaccatttttta-caacttttgtgacaactttctctctcatactc 27465067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 408
Target Start/End: Original strand, 29936768 - 29936821
Alignment:
Q  353 tttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattc 408  Q
    |||||||||||||| || ||||| ||||||||  ||||||||||||||||||||||    
T  29936768 tttttaacaactttggtgacaactctctctct--tactctcattgtacttttattc 29936821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 36775072 - 36775112
Alignment:
Q  329 gagtaatgatatctaaacatccattttttaacaacttttgt 369  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  36775072 gagtaatgatatttgaacatccattttttaacaacttttgt 36775112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 9567028 - 9566965
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| | |||| ||||||||| ||||||||||| |||||  |||||||||||||| ||||    
T  9567028 aatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacatt 9566965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 10890113 - 10890050
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| | |||||||||||| | ||||||||||| |||||  |||||||||||||| ||||    
T  10890113 aatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactcacatt 10890050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 15705129 - 15705066
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| | |||||||||||| | ||||||||||| |||||  |||||||||||||| ||||    
T  15705129 aatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactcacatt 15705066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 388
Target Start/End: Original strand, 28501451 - 28501506
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcata 388  Q
    |||||||| || ||| ||||||||| |||||||||| ||| |||||||||||||||    
T  28501451 aatgatatttatacaaccattttttgacaacttttggaaccaccctctctctcata 28501506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 36577479 - 36577416
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| | |||||||||||| | |||||||||| ||||||  |||||||||||||| ||||    
T  36577479 aatgatatttgaacatccattttgtgacaacttttgcaacaactttctctctcatactcacatt 36577416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 52362486 - 52362549
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| | |||||||||||| | ||||||||||| |||||  |||||||||||||| ||||    
T  52362486 aatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactcacatt 52362549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 391
Target Start/End: Complemental strand, 48983735 - 48983677
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    |||||||| | |||| ||||||||| ||||||||||| |||||  ||||||||||||||    
T  48983735 aatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactc 48983677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 405
Target Start/End: Original strand, 52437492 - 52437570
Alignment:
Q  327 tggagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtactttta 405  Q
    ||||| |||||||| || ||| ||||||||||| || |||||| |||||  |||||||||||||| |||| || |||||    
T  52437492 tggagaaatgatatatatacaaccattttttaataatttttgtgacaactttctctctcatactcacattatattttta 52437570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 4213076 - 4213141
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgt 398  Q
    |||||||| | |||| ||||||||| | ||||||||| |||||  |||||||||||||| ||||||    
T  4213076 aatgatatttgaacaaccattttttgataacttttgtgacaactttctctctcatactcacattgt 4213141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 16583100 - 16583055
Alignment:
Q  361 aacttttgtaacaaccctctctctcatactctcattgtacttttat 406  Q
    ||||||||| |||||  ||||||| |||||||||||||||||||||    
T  16583100 aacttttgtgacaactttctctcttatactctcattgtacttttat 16583055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 408
Target Start/End: Complemental strand, 15067850 - 15067822
Alignment:
Q  380 tctctcatactctcattgtacttttattc 408  Q
    |||||||||||||||||||||||||||||    
T  15067850 tctctcatactctcattgtacttttattc 15067822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 409
Target Start/End: Original strand, 41411000 - 41411032
Alignment:
Q  377 ctctctctcatactctcattgtacttttattct 409  Q
    ||||||||||||||| |||||||||||||||||    
T  41411000 ctctctctcatactcacattgtacttttattct 41411032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 331 - 409
Target Start/End: Complemental strand, 28982708 - 28982632
Alignment:
Q  331 gtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||||| | |||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||    
T  28982708 gtaatgatatttgaacatccattttttaacaacttttgtgacaa--ctctctctcatactctcattgtacttttattct 28982632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 407
Target Start/End: Complemental strand, 34383925 - 34383851
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttatt 407  Q
    |||||||| | ||||| ||||||||||||| |||||| |||||||||||||||||||| |||||||| |||||||    
T  34383925 aatgatatttgaacattcattttttaacaatttttgtgacaaccctctctctcatactttcattgtatttttatt 34383851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 329 - 409
Target Start/End: Original strand, 354276 - 354354
Alignment:
Q  329 gagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||||| | | |||||||||||||||||||||||||| ||||  |||||||||||||||| ||||| ||||||||||    
T  354276 gagtaatgatgtttgaacatccattttttaacaacttttgtgacaa--ctctctctcatactcttattgttcttttattct 354354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 409
Target Start/End: Complemental strand, 2204449 - 2204394
Alignment:
Q  354 ttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||||||||||| ||||| |||||||||||| | ||||||||||||||||||    
T  2204449 ttttaacaacttttgtgacaactctctctctcataatttcattgtacttttattct 2204394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 328 - 396
Target Start/End: Complemental strand, 17182008 - 17181940
Alignment:
Q  328 ggagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||| |||||||| |||||| |||||||| ||||||||||||||||||  ||| |||||||||| ||||    
T  17182008 ggagaaatgatatttaaacaaccatttttgaacaacttttgtaacaactttctatctcatactcacatt 17181940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 23632704 - 23632628
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||| | |||| ||| |||| |||||||||||| ||| |  ||| ||||||||||||||||||||||||||||    
T  23632704 aatgatatttgaacaaccacttttaaacaacttttgtgacacctttctatctcatactctcattgtacttttattct 23632628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 17551446 - 17551383
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| | |||| ||||||||| |||||||||||||||||  |||||||||||||| ||||    
T  17551446 aatgatatttgaacaaccattttttgacaacttttgtaacaactttctctctcatactcacatt 17551383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 409
Target Start/End: Complemental strand, 5456918 - 5456843
Alignment:
Q  332 taatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    ||||||||| | ||||| |||||||||||||||||||| ||||  |||||||||||| | | ||| ||||||||||||    
T  5456918 taatgatatttgaacattcattttttaacaacttttgtgacaa--ctctctctcatatttttattatacttttattct 5456843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 391
Target Start/End: Original strand, 20029265 - 20029323
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    |||||||| || ||| ||| |||||||||||||||| ||||||| ||||||||||||||    
T  20029265 aatgatatttatacaaccactttttaacaacttttgaaacaaccttctctctcatactc 20029323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 15368890 - 15368833
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatact 390  Q
    |||||||| | |||||||||||| ||||||||||||| |||||  |||||||||||||    
T  15368890 aatgatatttgaacatccattttgtaacaacttttgttacaactttctctctcatact 15368833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 409
Target Start/End: Original strand, 10729590 - 10729646
Alignment:
Q  351 attttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    ||||||||||||||||||| ||||  ||| |||||||||| |||||||| |||||||||    
T  10729590 attttttaacaacttttgtgacaa--ctcactctcatactttcattgtatttttattct 10729646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 18141368 - 18141305
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| ||||||| |||||| | ||||||||||| |||||  |||||||||||||| ||||    
T  18141368 aatgatatttaaacattcattttatgacaacttttgtgacaactttctctctcatactcacatt 18141305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 20822935 - 20822872
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| | |||||||||||| | ||||||||||| |||||  |||||||||||||| ||||    
T  20822935 aatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactcacatt 20822872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 32046702 - 32046765
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| | |||||| ||||| ||||||||| ||| |||||| |||||||||||||| ||||    
T  32046702 aatgatatttgaacatcaattttgtaacaacttatgtgacaaccttctctctcatactcacatt 32046765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 35213628 - 35213565
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| | |||||| ||||| | |||||||||||||||||  |||||||||||||| ||||    
T  35213628 aatgatatttgaacatctattttgtgacaacttttgtaacaactttctctctcatactcacatt 35213565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 391
Target Start/End: Original strand, 8747174 - 8747231
Alignment:
Q  334 atgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    ||||||| | |||||||||||| | ||||||||||| |||||  ||||||||||||||    
T  8747174 atgatattttaacatccattttgtgacaacttttgttacaactttctctctcatactc 8747231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 10840740 - 10840780
Alignment:
Q  351 attttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    ||||||| |||||||||| ||||| ||||||||||||||||    
T  10840740 attttttgacaacttttggaacaatcctctctctcatactc 10840780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 405
Target Start/End: Complemental strand, 16337974 - 16337918
Alignment:
Q  349 ccattttttaacaacttttgtaacaaccctctctctcatactctcattgtactttta 405  Q
    ||||||| ||| |||||||||||||||  |||||||||||||| |||| || |||||    
T  16337974 ccattttataataacttttgtaacaactttctctctcatactcacattatattttta 16337918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 33683522 - 33683562
Alignment:
Q  351 attttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    ||||||| |||||||||| ||| ||||||||||||||||||    
T  33683522 attttttgacaacttttgaaactaccctctctctcatactc 33683562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 332 - 409
Target Start/End: Original strand, 2819256 - 2819333
Alignment:
Q  332 taatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    ||||||||| | |||||||||||||||||||||||| | |||||| ||||||||||| ||||||||||||||||||||    
T  2819256 taatgatatttgaacatccattttttaacaacttttatgacaaccatctctctcatattctcattgtacttttattct 2819333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 41750119 - 41750195
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||| |||||| |||||||| |||||||||||||| |||  ||||||||||||||||||||||||||||||||    
T  41750119 aatgatatttaaacaaccatttttaaacaacttttgtaataactttctctctcatactctcattgtacttttattct 41750195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 392
Target Start/End: Complemental strand, 48814879 - 48814816
Alignment:
Q  329 gagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactct 392  Q
    |||||||||||| | ||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  48814879 gagtaatgatatttgaacattcattttttaacaacttttgtgacaaccctctctctcatactct 48814816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 9792770 - 9792846
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||| | |||| ||| |||| |||||||||||| | |||  ||||||||||||||||||||||||||||||||    
T  9792770 aatgatatttgaacaaccacttttaaacaacttttgtgataactttctctctcatactctcattgtacttttattct 9792846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 47448830 - 47448895
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgt 398  Q
    |||||||| | |||| ||||||||| ||||||||||| |||||  |||||||||||||| ||||||    
T  47448830 aatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacattgt 47448895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 12233063 - 12233012
Alignment:
Q  339 atctaaacatccattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    |||| |||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  12233063 atctgaacatccattttgtaacaacttttg-aacaaccatctctctcatactc 12233012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 19223443 - 19223519
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||| | |||||| | |||||||||| |||||| ||||| |||||  ||||||| | ||||||||||||||||    
T  19223443 aatgatatttgaacatctactttttaacaatttttgtgacaactctctcgttcatacttttattgtacttttattct 19223519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 40854722 - 40854650
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtactttta 405  Q
    ||||||||||  ||||||||||| ||||||||||||| ||||   |||||||||||||| |||| || |||||    
T  40854722 aatgatatctgtacatccattttctaacaacttttgtgacaattttctctctcatactcacattatattttta 40854650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 47925363 - 47925399
Alignment:
Q  355 tttaacaacttttgtaacaaccctctctctcatactc 391  Q
    |||||||||||||| ||||||||||||||||||||||    
T  47925363 tttaacaacttttggaacaaccctctctctcatactc 47925399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 391
Target Start/End: Original strand, 6427214 - 6427272
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    |||||||| || ||| ||| ||||| |||||||||  ||||||||||||||||||||||    
T  6427214 aatgatatttatacaaccactttttgacaacttttagaacaaccctctctctcatactc 6427272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 391
Target Start/End: Complemental strand, 12007253 - 12007195
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    |||||||| | |||| ||||||||| ||||||||||| |||||  ||||||||||||||    
T  12007253 aatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactc 12007195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 22589012 - 22588970
Alignment:
Q  349 ccattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    ||||||||| |||||||||| |||||||| |||||||||||||    
T  22589012 ccattttttgacaacttttgaaacaaccccctctctcatactc 22588970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 396
Target Start/End: Original strand, 30941384 - 30941452
Alignment:
Q  327 tggagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    ||||| |||||||| | |||| |||||||||| |||||||||| |||||  |||||||||||||| ||||    
T  30941384 tggagaaatgatatttgaacaaccatttttta-caacttttgtgacaactttctctctcatactcacatt 30941452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 390
Target Start/End: Complemental strand, 48314408 - 48314371
Alignment:
Q  353 tttttaacaacttttgtaacaaccctctctctcatact 390  Q
    |||||||||||||||  |||||||||||||||||||||    
T  48314408 tttttaacaacttttacaacaaccctctctctcatact 48314371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 396
Target Start/End: Original strand, 34820633 - 34820677
Alignment:
Q  352 ttttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||| |||||||||| ||||||||||| |||||||||| ||||    
T  34820633 tttttttacaacttttgaaacaaccctctatctcatactcacatt 34820677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 42584822 - 42584878
Alignment:
Q  349 ccattttttaacaacttttgtaacaaccctctctctcatactctcattgtactttta 405  Q
    ||||||| ||||||||||||| |||||  |||||||||||||| |||| || |||||    
T  42584822 ccattttctaacaacttttgtgacaactttctctctcatactcacattatattttta 42584878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 21515007 - 21514930
Alignment:
Q  330 agtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    ||||||||||| | ||||||||||||||||||| |||||| |||||||||  ||||||||||||||||||||||||||||    
T  21515007 agtaatgatatttgaacatccattttttaacaatttttgtgacaaccctc--tctcatactctcattgtacttttattct 21514930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 31266301 - 31266225
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||| | ||||||||||||||||||| |||||| | ||  |||||||||||||| ||||||||||||||||||    
T  31266301 aatgatatttgaacatccattttttaacaatttttgtgataattctctctctcatactttcattgtacttttattct 31266225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 8671623 - 8671551
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtactttta 405  Q
    |||||||| |||||||||||||| ||| ||||||||||| |||  |||||||||||||| |||| || |||||    
T  8671623 aatgatatttaaacatccattttataataacttttgtaataactttctctctcatactcgcattatattttta 8671551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 377 - 409
Target Start/End: Complemental strand, 12172114 - 12172082
Alignment:
Q  377 ctctctctcatactctcattgtacttttattct 409  Q
    |||||||||||||||||||||||||||||||||    
T  12172114 ctctctctcatactctcattgtacttttattct 12172082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 377 - 409
Target Start/End: Complemental strand, 12416542 - 12416510
Alignment:
Q  377 ctctctctcatactctcattgtacttttattct 409  Q
    |||||||||||||||||||||||||||||||||    
T  12416542 ctctctctcatactctcattgtacttttattct 12416510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 31596952 - 31597015
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| | |||||||||||| | |||| |||||| ||||| ||||||||||||||| ||||    
T  31596952 aatgatatttgaacatccattttatgacaatttttgtgacaactctctctctcatactcacatt 31597015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 33100536 - 33100473
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| | |||| ||||||| ||||||||||||| |||||  |||||||||||||| ||||    
T  33100536 aatgatatttgaacaaccattttataacaacttttgtgacaactttctctctcatactcacatt 33100473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 34718119 - 34718182
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| | |||||||||||| | ||||||||||| |||||  |||||||||||||| ||||    
T  34718119 aatgatatttgaacatccattttgtgacaacttttgttacaactttctctctcatactcacatt 34718182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 391
Target Start/End: Original strand, 3946244 - 3946302
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    |||||||| | |||||||||||| | ||||||||||| |||||  ||||||||||||||    
T  3946244 aatgatatttgaacatccattttgtgacaacttttgtgacaactttctctctcatactc 3946302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 391
Target Start/End: Complemental strand, 26629157 - 26629119
Alignment:
Q  353 tttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  26629157 tttttgacaacttttgaaacaaccctctctctcatactc 26629119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 407
Target Start/End: Complemental strand, 42733632 - 42733558
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttatt 407  Q
    |||||||| | |||| |||||||| ||||| |||||| ||||   ||||||| ||||| ||||||||||||||||    
T  42733632 aatgatatttgaacaaccatttttaaacaatttttgtgacaattttctctcttatactttcattgtacttttatt 42733558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 5772039 - 5771986
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctca 386  Q
    |||||||| | |||| ||||||||| ||||||||||||||||| ||||| ||||    
T  5772039 aatgatatttgaacaaccattttttgacaacttttgtaacaactctctccctca 5771986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 398
Target Start/End: Complemental strand, 33451634 - 33451565
Alignment:
Q  329 gagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgt 398  Q
    |||||| ||||| | ||||  |||||||| ||||||||||| |||||  |||||||||||||| ||||||    
T  33451634 gagtaacgatatttgaacaatcattttttgacaacttttgtgacaactttctctctcatactcacattgt 33451565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 385
Target Start/End: Complemental strand, 5771943 - 5771891
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctc 385  Q
    |||||||| | |||| ||||||| | ||||||||||||||||| |||||||||    
T  5771943 aatgatatttgaacaaccattttgtgacaacttttgtaacaactctctctctc 5771891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 396
Target Start/End: Original strand, 7598707 - 7598775
Alignment:
Q  328 ggagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||| |||||||| | |||| ||||||||| ||||||||||| || ||  |||||||||||||| ||||    
T  7598707 ggagaaatgatatttgaacaaccattttttgacaacttttgtgaccactttctctctcatactcacatt 7598775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 21526357 - 21526285
Alignment:
Q  324 ttgtggagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| |||||||| |  ||| ||| |||||||||||||||||||||    |||||||||||||| ||||    
T  21526357 ttgtggagaaatgatatttgtacaaccactttttaacaacttttgtaacagttttctctctcatactcacatt 21526285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 405
Target Start/End: Complemental strand, 25830297 - 25830241
Alignment:
Q  349 ccattttttaacaacttttgtaacaaccctctctctcatactctcattgtactttta 405  Q
    ||||||| ||||||||||||| |||||  |||||||||||||| |||| || |||||    
T  25830297 ccattttctaacaacttttgtgacaactttctctctcatactcacattatattttta 25830241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 35067180 - 35067236
Alignment:
Q  349 ccattttttaacaacttttgtaacaaccctctctctcatactctcattgtactttta 405  Q
    |||||| |||||||||||||| |||||  |||||||||||||| |||| || |||||    
T  35067180 ccatttcttaacaacttttgtgacaactttctctctcatactcacattatattttta 35067236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 409
Target Start/End: Complemental strand, 37379481 - 37379426
Alignment:
Q  353 tttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    ||||| |||||||||| ||||||| |||||||||||||| || ||| ||||||||||    
T  37379481 tttttgacaacttttgaaacaaccatctctctcatactcaca-tgtgcttttattct 37379426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 409
Target Start/End: Original strand, 3698321 - 3698393
Alignment:
Q  337 atatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||| ||||||||| |||||| ||| ||||| ||||| |||||||||||||||| ||||||||||||||||    
T  3698321 atatctgaacatccatattttaataacatttgtgacaactctctctctcatactcttattgtacttttattct 3698393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 51734700 - 51734624
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||| | |||| ||| |||| |||||||||||| |||||  ||||||||||||||||||||||||||||||||    
T  51734700 aatgatatttgaacaaccacttttaaacaacttttgtgacaactttctctctcatactctcattgtacttttattct 51734624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 343 - 409
Target Start/End: Original strand, 54128067 - 54128131
Alignment:
Q  343 aaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    ||||| |||||||| |||||||||||| |||||  ||||||||||||||||||||||||||||||||    
T  54128067 aaacaaccatttttaaacaacttttgtgacaac--tctctctcatactctcattgtacttttattct 54128131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 2268574 - 2268512
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| | ||||||||||||| |||||||||||| |||||  |||||||||||||| ||||    
T  2268574 aatgatatttgaacatccattttt-aacaacttttgtgacaactttctctctcatactcacatt 2268512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 5932224 - 5932161
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| |||||||||||||  | |||||||||| ||||||  |||||||||||||| ||||    
T  5932224 aatgatatttaaacatccatttagtgacaacttttgcaacaactttctctctcatactcacatt 5932161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 22819653 - 22819716
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||||||| | |||||||||||| | |||||||||| ||||||  |||||||||||||| ||||    
T  22819653 aatgatatttgaacatccattttgtgacaacttttgcaacaactttctctctcatactcacatt 22819716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 405
Target Start/End: Complemental strand, 5932837 - 5932759
Alignment:
Q  327 tggagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtactttta 405  Q
    ||||| |||||||| | |||| ||| ||||| ||||||||||| |||||  |||||||||||||| |||| | ||||||    
T  5932837 tggagaaatgatatttgaacaaccactttttgacaacttttgtgacaactttctctctcatactcacattatcctttta 5932759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 391
Target Start/End: Original strand, 17367449 - 17367507
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    |||||||| || ||| ||| ||||| |||||||||| ||||||| ||||||||||||||    
T  17367449 aatgatatttatacaaccactttttgacaacttttgaaacaaccatctctctcatactc 17367507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 37514187 - 37514141
Alignment:
Q  345 acatccattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    ||||||||||| ||||||||||||| |||||  ||||||||||||||    
T  37514187 acatccattttgtaacaacttttgtgacaactttctctctcatactc 37514141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 391
Target Start/End: Original strand, 51255750 - 51255808
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    |||||||| | |||| ||||||||| ||||||||||| |||||  ||||||||||||||    
T  51255750 aatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactc 51255808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 2004256 - 2004192
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattg 397  Q
    |||||||| | |||| |||||||||||||||||||| ||||||  ||| |||| ||||| |||||    
T  2004256 aatgatatttgaacaaccattttttaacaacttttgcaacaactttctatctcttactcacattg 2004192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 401
Target Start/End: Original strand, 12706162 - 12706236
Alignment:
Q  328 ggagtaatgatatctaaacatccattttttaacaacttttgtaacaa--ccctctctctcatactctcattgtact 401  Q
    |||| |||||||| | ||||||||||||  ||||||||||  |||||  | |||||||||||||||||||||||||    
T  12706162 ggagaaatgatatttgaacatccattttc-aacaactttttaaacaaatctctctctctcatactctcattgtact 12706236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 409
Target Start/End: Original strand, 24772687 - 24772750
Alignment:
Q  345 acatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    ||||||||||| | ||||||||| | |||||| |||||||||||||| |||| |||| |||||||    
T  24772687 acatccattttatgacaactttt-tgacaaccttctctctcatactcacattatactcttattct 24772750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 407
Target Start/End: Complemental strand, 101973 - 101899
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttatt 407  Q
    |||||||||| |||| ||||||||| ||||||||||| |||||  |||||||||||||| |||||| ||| ||||    
T  101973 aatgatatctgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacattgtccttctatt 101899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 407
Target Start/End: Original strand, 15260311 - 15260385
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttatt 407  Q
    |||||||| | |||| ||| ||||  ||||||||||| ||||| ||||||||||||| |||||| ||||||||||    
T  15260311 aatgatatttgaacaaccacttttagacaacttttgtgacaactctctctctcatacactcattatacttttatt 15260385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 350 - 409
Target Start/End: Complemental strand, 37468308 - 37468253
Alignment:
Q  350 cattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    ||||||| |||||||||||| |||||    ||||||||||||||||||||||||||||||    
T  37468308 catttttaaacaacttttgtgacaac----tctctcatactctcattgtacttttattct 37468253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 409
Target Start/End: Complemental strand, 4969580 - 4969526
Alignment:
Q  353 tttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||||||||| || |||||  |||||||||||||| |||||||||||||||||    
T  4969580 tttttaacaactttggtgacaac--tctctctcatactcacattgtacttttattct 4969526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 396
Target Start/End: Complemental strand, 6999149 - 6999072
Alignment:
Q  319 ttttgttgtggagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    ||||||| | ||| |||||||| | |||||||||||| | ||||||||||| |||||  |||||||||||||| ||||    
T  6999149 ttttgtttttgagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactcacatt 6999072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 377 - 409
Target Start/End: Original strand, 4285549 - 4285581
Alignment:
Q  377 ctctctctcatactctcattgtacttttattct 409  Q
    |||||||||||||||||||||||||||||||||    
T  4285549 ctctctctcatactctcattgtacttttattct 4285581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 408
Target Start/End: Original strand, 7438572 - 7438645
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattc 408  Q
    |||||||| | |||| |||||||| |||||||||| | |||||  |||||||||||||| |||| |||||||||||    
T  7438572 aatgatatttgaacaaccatttttaaacaacttttatgacaac--tctctctcatactcacattctacttttattc 7438645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 391
Target Start/End: Original strand, 13765399 - 13765462
Alignment:
Q  328 ggagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    |||| |||||||| | |||||||||||| | ||||||||||| |||||  ||||||||||||||    
T  13765399 ggagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatactc 13765462  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 391
Target Start/End: Original strand, 6170634 - 6170692
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    |||||||| | |||||||||||| | ||||||||||| |||||  ||||||||||||||    
T  6170634 aatgatatttcaacatccattttatgacaacttttgtgacaactttctctctcatactc 6170692  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 15610883 - 15610841
Alignment:
Q  349 ccattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    ||||||||| |||||||||| ||||||||||||| ||||||||    
T  15610883 ccattttttgacaacttttgaaacaaccctctctatcatactc 15610841  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 405
Target Start/End: Complemental strand, 18737927 - 18737869
Alignment:
Q  347 atccattttttaacaacttttgtaacaaccctctctctcatactctcattgtactttta 405  Q
    ||||||||||||||||||||||| |||||  ||||||||||| || |||| || |||||    
T  18737927 atccattttttaacaacttttgtgacaactttctctctcatattcacattatattttta 18737869  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 40874312 - 40874270
Alignment:
Q  349 ccattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    |||||||||||||||||||| ||||||| | ||||||||||||    
T  40874312 ccattttttaacaacttttgaaacaaccatgtctctcatactc 40874270  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 2563708 - 2563765
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatact 390  Q
    |||||||| | |||||||||||| | ||||||||||| |||||  |||||||||||||    
T  2563708 aatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcatact 2563765  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 405
Target Start/End: Original strand, 8427556 - 8427628
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtactttta 405  Q
    |||||||| | |||||| ||||||| |||| |||||| |||||  |||||||||||||  |||| ||||||||    
T  8427556 aatgatatttgaacatctattttttgacaatttttgtgacaactttctctctcatacttacattatactttta 8427628  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 14871851 - 14871915
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattg 397  Q
    |||||||| | |||| ||||||||| ||||||||||| ||| |  |||||||||||||| |||||    
T  14871851 aatgatatgtgaacaaccattttttgacaacttttgtgacagctttctctctcatactcacattg 14871915  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 396
Target Start/End: Original strand, 18723593 - 18723661
Alignment:
Q  328 ggagtaatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcatt 396  Q
    |||| |||||||| | |||||||||||| | |||| |||||| |||||  |||||||||||||| ||||    
T  18723593 ggagaaatgatatttgaacatccattttgtgacaatttttgttacaactttctctctcatactcacatt 18723661  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 409
Target Start/End: Complemental strand, 23345044 - 23344981
Alignment:
Q  345 acatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||| |||||| ||||||||||| | |||||| ||||||||||| || |||| ||||||||||||    
T  23345044 acattcattttataacaactttt-tgacaaccttctctctcatattcacattatacttttattct 23344981  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 40210135 - 40210059
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||| | |||| | |||||| || || |||||| |||||  |||||||||||||| |||| ||||||||||||    
T  40210135 aatgatatttgaacaactatttttaaataatttttgtgacaactttctctctcatactcacattatacttttattct 40210059  T

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Target: scaffold1625 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 391
Target Start/End: Complemental strand, 831 - 790
Alignment:
Q  350 cattttttaacaacttttgtaacaaccctctctctcatactc 391  Q
    |||||||| |||||||||| ||||||| ||||||||||||||    
T  831 cattttttgacaacttttgaaacaaccatctctctcatactc 790  T

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Target: scaffold0432 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 398
Target Start/End: Complemental strand, 6587 - 6522
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgt 398  Q
    |||||||| | ||||  |||||||||||||||||||| |||||  | |||||||||||| ||||||    
T  6587 aatgatatttgaacaatcattttttaacaacttttgtgacaactttatctctcatactcacattgt 6522  T

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Target: scaffold0481 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 1267 - 1192
Alignment:
Q  333 aatgatatctaaacatccattttttaacaacttttgtaacaaccctctctctcatactctcattgtacttttattct 409  Q
    |||||||| |||||| ||| |||| |||||||||  | ||||  ||||||| |||||||| ||||||||||||||||    
T  1267 aatgatatttaaacaaccactttt-aacaactttgatgacaattctctctcacatactcttattgtacttttattct 1192  T

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