View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8281_high_5 (Length: 301)
Name: NF8281_high_5
Description: NF8281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8281_high_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 32016550 - 32016844
Alignment:
| Q |
17 |
ggaagttgagatttgaggatgatggagtcatttcggtaagctcagtgtacaaggtgttggaggggttgttaattttagaggatggtttgaatcctgtgga |
116 |
Q |
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| T |
32016550 |
ggaagttgagatttgaggatgatggagtcatttcggtaagctcaatgtacaaggtgttggaggggttgttaattttagaggatggtttgaatccggtgga |
32016649 |
T |
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| Q |
117 |
ggaaaaggtgtttgattacttttggaaaagcccggccccgtcaaaagttgtggctttttcttg----------cgtgatcggattcctacgggaggaatc |
206 |
Q |
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| T |
32016650 |
ggaagaggtgtttggttacctttggaaaagcccagccccgtcaaaagttgtggctttttcttggaaacttcttcgtaatcggattcctacaggagaaatc |
32016749 |
T |
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| Q |
207 |
ttgccattcagaatttattggacccgaaaagttcgaccaattgtgttttttgcgatgcttaggtagaatcttcaacgcatcttttcttgcattgt |
301 |
Q |
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| T |
32016750 |
ttgccattcagaatttattggatccgaaaagttcgaccaattgtgttttttgcgatgcttcggtagaatcttcaacacatattttcttgcattgt |
32016844 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 7425062 - 7425105
Alignment:
| Q |
137 |
tttggaaaagcccggccccgtcaaaagttgtggctttttcttgc |
180 |
Q |
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| T |
7425062 |
tttggaagagcccggctcggtcaaaagttgtggctttttcttgc |
7425105 |
T |
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