View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8281_low_1 (Length: 654)
Name: NF8281_low_1
Description: NF8281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8281_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 20 - 448
Target Start/End: Complemental strand, 13870522 - 13870096
Alignment:
| Q |
20 |
tgaccaaagtgagagagacgaaggactctgttgtttttgagtgtgtatgtgttcagaggtgtcaggaaggaggaagttgaggttaccgtggatgacaaca |
119 |
Q |
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| T |
13870522 |
tgaccaaagtgagagagacggaggactctgttgtttttgagtgtgtatgtgttcagaggtgtcaggaaggaggaagttgaggttactgtggatgacaaca |
13870423 |
T |
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| Q |
120 |
ctctcgccgttaaggatgctcttcctggccggaatcagttcaatgcaacaattaacttaactgggaagtaggctattggtctttggtttgacgaagaaaa |
219 |
Q |
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| T |
13870422 |
ctctcaccgttaaggatgctcttcctggccggaatcagttcaatggaacaatcaacttaactgggaagtaggctatttgtctttggtttgacgaagaaaa |
13870323 |
T |
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| Q |
220 |
ctctttgtgtgggaaaccattttgtgcaatagtcttttggaggtaattaggaattggagaagagtgggaggagaggataggtggtggtggaagtcggagg |
319 |
Q |
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| T |
13870322 |
ctct--gtgtgggaaaccattttgtgcaatagtcttttggaggtaattgggaattggagaagagtgggaggagaggataggtggtggtggaagtcggagg |
13870225 |
T |
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| Q |
320 |
agacaggtagttttatggtgagttcaacctacaagatcttggagaatttgttgataccgagagaggaattgtgtggtaccaaagaaagggtgtttgggtc |
419 |
Q |
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| T |
13870224 |
agacaggtagttttatggtgagttcaacctacaagatcttggagaatttgttgataccgagagaggaattgtgtggtaccaaagaaagggtgtttgggtc |
13870125 |
T |
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| Q |
420 |
cgtttggaaaagcctggctcctacaaagg |
448 |
Q |
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| T |
13870124 |
cgtgtggaaaagcctggcttctacaaagg |
13870096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 445 - 587
Target Start/End: Complemental strand, 13870037 - 13869898
Alignment:
| Q |
445 |
aaggaggagagttt-gcctttagatgactcagtgaattgtgttttctgcaatctgagggctgaaatctcctcacatattttccttcattgtcagtttgcc |
543 |
Q |
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| T |
13870037 |
aaggaggagagttttgcctttagatgactcagtgaattgtgttttctgcaatctgagggctgaaatctcctcacatattttccttcattgtcagtttgcc |
13869938 |
T |
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| Q |
544 |
ttcaaggtatggtctaattaaggtgcttggttggttacatatta |
587 |
Q |
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| T |
13869937 |
ttcaaggtatggtc----taaggtgcttggttggttacatatta |
13869898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 634
Target Start/End: Complemental strand, 13884534 - 13884496
Alignment:
| Q |
594 |
ttaattgtgttgttatgggaagtgatcactacacttgttga |
634 |
Q |
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| T |
13884534 |
ttaattgtgtt--tatgggaagtgatcactacacttgttga |
13884496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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