View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8281_low_2 (Length: 602)
Name: NF8281_low_2
Description: NF8281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8281_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 18 - 587
Target Start/End: Original strand, 2942642 - 2943206
Alignment:
| Q |
18 |
tttacaaagaaaatatctgaaaatatcatggcataatgtttctgtaatgcagccagttttgatttttaatgacctaggattgacttctgattttatatta |
117 |
Q |
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| T |
2942642 |
tttacaaagaaaatatctgaaaatatcatggcaaaatgtttctgtaatgcagccagttttgatttttaatgacctaggattgacttttgat-----atta |
2942736 |
T |
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| Q |
118 |
tgtccaccagagttattgtctctatagaaagcttttgaatatgagtttgacaggtttccttttctctaggagcccgggaaagatcataagtgtaagtgtc |
217 |
Q |
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| T |
2942737 |
tgtccgccagagttattgtctctatagaaagcttttgaatattagtttgacaggtttccttttttctaggagcccgggaaagatcataagtgtaagtgtc |
2942836 |
T |
|
| Q |
218 |
cctacatttgaagcccttactcaatttggagttgctacaatcaccactaagaatactggtgaggtggaagcatcatatagtttgacggtattctgattct |
317 |
Q |
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| T |
2942837 |
cctacatttgaagcccttactcaatttggagttgctacaatcaccactaagaatactggtgaggtggaagcatcatatagtttgacggtattctgattct |
2942936 |
T |
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| Q |
318 |
caacccttccttcatagttcttacattctttgtaaagttctatagtgttcttcatggcatctatttttgttatacagttctacttttacttggacaatgc |
417 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2942937 |
caacctttccttcatagttcttacattctttgtaaagttctatagtgttcttcatggcatctatttttgttatacagttctacttttacttggacaatgc |
2943036 |
T |
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| Q |
418 |
aatgttgattgtcagatacacattatgtaaattttattgttgtagccnnnnnnnttcaaggttaaaaatgtcatttgtgttctgttcctattctttgctt |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2943037 |
aatgttgattgtcagatacacattatgtaaattttattgttgtagccaaaaaaattcaaggttaaaaatgtcatttgtgttctgttcctattctttgctt |
2943136 |
T |
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| Q |
518 |
ataagatctgataggaaactggnnnnnnnnaaagattaataactggatgatccgtgatcacagttcatat |
587 |
Q |
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| T |
2943137 |
ataagatctgataggaaactgggtttttttaaagattaataacaggatgatccgtgatcacagttcatat |
2943206 |
T |
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