View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8281_low_5 (Length: 392)
Name: NF8281_low_5
Description: NF8281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8281_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 379
Target Start/End: Original strand, 5983078 - 5983446
Alignment:
| Q |
11 |
cagagaagtcaattgagtttgtgatcaggttttcgaaggcagggaatctttcttcctatggaaatcttatgggggatgcctttgggaaatacggaaaaat |
110 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5983078 |
cagaaaagtcaattgagtttgtgattaggttttcgagggcagggaatctttcttcctatggaagtcttatgggggatgcctttgggaaatacggaaaaat |
5983177 |
T |
|
| Q |
111 |
atcggtccagatatgtattgtaatcggtaacactggcatgctgattgtttacatgatcattgttggtgagaccatattcttaattctagtgttttaaaat |
210 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5983178 |
atcggtggagatatgtattgtaatcggtaacactggtatgctgattgtttacatgatcattgttggtgagaccatattcttaattctagtgttttaaaat |
5983277 |
T |
|
| Q |
211 |
tatatagatgtaatccgatttggttttgtgtgattcagtttcgttttgttcgtatttgtaggcgatatcatttcaggaacaacttcaagtggaattcacc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5983278 |
tatatagatgtaatccgatttggttttgtgtgattcagtttcgttttgttcgtatttgtaggcgatgtcatttcaggaacaacttcaagtggaattcacc |
5983377 |
T |
|
| Q |
311 |
atcctggtatacttgaaggatggtttggtgtccattggtggaccgggcgtacatttgttcttgtttttg |
379 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5983378 |
atcctggtatacttgaaggatggtttggtgtccattggtggaccgggcgtacatttgttcttgtttttg |
5983446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 11 - 199
Target Start/End: Original strand, 5961654 - 5961842
Alignment:
| Q |
11 |
cagagaagtcaattgagtttgtgatcaggttttcgaaggcagggaatctttcttcctatggaaatcttatgggggatgcctttgggaaatacggaaaaat |
110 |
Q |
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|||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| |
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| T |
5961654 |
cagagaaggcaattgagttcatgatcaggttttcgagagcagggaatctttcttcctatggaagtcttatgggagatacctttgggaaatacggaaaagc |
5961753 |
T |
|
| Q |
111 |
atcggtccagatatgtattgtaatcggtaacactggcatgctgattgtttacatgatcattgttggtgagaccatattcttaattctag |
199 |
Q |
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| ||| |||||||| || ||||| |||| ||| || ||||||||||||||||||||| ||||||||||| ||||||||| ||||| |
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| T |
5961754 |
actggtagagatatgtgttataatcactaacgttggtattctgattgtttacatgatcattattggtgagaccttattcttaagtctag |
5961842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 5967164 - 5967517
Alignment:
| Q |
11 |
cagagaagtcaattgagtttgtgatcaggttttcgaaggcagggaatctttcttcctatggaaatcttatgggggatgcctttgggaaatacggaaaaat |
110 |
Q |
| |
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|||||||||||||||| || | ||||||||||| | ||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
5967164 |
cagagaagtcaattgatttcataatcaggttttctagggcagggaaactttcttcctatggaaatcttatgggagatgcctatgggaaatacggaaaagc |
5967263 |
T |
|
| Q |
111 |
atcggtccagatatgtattgtaatcggtaacactggcatgctgattgtttacatgatcattgttggtgagaccatattcttaattctagtgttttaaaat |
210 |
Q |
| |
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||| | |||||||| || ||| || || || | ||||| | |||||||||||| ||||||||||||||||||||| ||||| ||||| | |
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| T |
5967264 |
gtcgttggagatatgtgttttaac---taccatcggtagtctgatcatgtacatgatcattattggtgagaccatattcttaagtctagacttttactgt |
5967360 |
T |
|
| Q |
211 |
tat--atagatgtaatccgatttggttttgtgtgattcagtttcgt-tttgttcgtatttgtaggcgatatcatttcaggaacaacttcaagtggaattc |
307 |
Q |
| |
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||| |||| | |||| |||| | ||||| ||| || ||||||| ||| |||||| ||| | ||||| |||||||||||||||||||||| |
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| T |
5967361 |
tatcattagagaaga----atttaaggttgtataattcaattttgtttttgttcatat-tgtaggtgatgtgatttctggaacaacttcaagtggaattc |
5967455 |
T |
|
| Q |
308 |
accatcctggtatacttgaaggatggtttggtgtccattggtggaccgggcgtacatttgtt |
369 |
Q |
| |
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||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5967456 |
accatgctggtgtccttgaaggatggtttggtgtccattggtggaccgggcgtacatttgtt |
5967517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 241 - 378
Target Start/End: Original strand, 5961944 - 5962080
Alignment:
| Q |
241 |
tgattcagtttcgttttgttcgtatttgtaggcgatatcatttcaggaacaacttcaagtggaattcaccatcctggtatacttgaaggatggtttggtg |
340 |
Q |
| |
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||||||||||| |||||||| ||||| ||||| ||| | ||||| ||||| |||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5961944 |
tgattcagtttggttttgtttgtatt-gtaggtgatgtgatttctggaacgacttcaggtggaattcaccatcctggtatccttgaaggatggtttggtg |
5962042 |
T |
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| Q |
341 |
tccattggtggaccgggcgtacatttgttcttgttttt |
378 |
Q |
| |
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||||||||||||| ||||| ||||||||| |||||||| |
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| T |
5962043 |
tccattggtggactgggcgcacatttgttgttgttttt |
5962080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 253 - 372
Target Start/End: Original strand, 5933379 - 5933497
Alignment:
| Q |
253 |
gttttgttcgtatttgtaggcgatatcatttcaggaacaacttcaagtggaattcaccatcctggtatacttgaaggatggtttggtgtccattggtgga |
352 |
Q |
| |
|
|||||||||||||| ||||| ||| | |||| ||||||||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||||||| |
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| T |
5933379 |
gttttgttcgtatt-gtaggtgatgtggtttctggaacaacttcaagtggaattcaccattctggtatcctcgaaggatggtttggagtccattggtgga |
5933477 |
T |
|
| Q |
353 |
ccgggcgtacatttgttctt |
372 |
Q |
| |
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| |||||||||||||||||| |
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| T |
5933478 |
ctgggcgtacatttgttctt |
5933497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 5932768 - 5932865
Alignment:
| Q |
11 |
cagagaagtcaattgagtttgtgatcaggttttcgaaggcagggaatctttcttcctatggaaatcttatgggggatgcctttgggaaatacggaaaa |
108 |
Q |
| |
|
||||||||||| |||| || || |||||||||| | |||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||| |
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| T |
5932768 |
cagagaagtcagttgaattcatgctcaggttttcaagggcagggaatctttcttcatatggaagtcttatgggggatgcctttgggagatatggaaaa |
5932865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 377
Target Start/End: Original strand, 11044091 - 11044181
Alignment:
| Q |
287 |
gaacaacttcaagtggaattcaccatcctggtatacttgaaggatggtttggtgtccattggtggaccgggcgtacatttgttcttgtttt |
377 |
Q |
| |
|
|||||||| ||| | ||||||||||| ||| ||| ||||||| | || |||||| ||||| ||||| |||| |||||||||||||||||| |
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|
| T |
11044091 |
gaacaactgcaaatagaattcaccattctgatatctttgaagggttgtctggtgttcattgttggactgggcatacatttgttcttgtttt |
11044181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 353
Target Start/End: Complemental strand, 55925130 - 55925070
Alignment:
| Q |
288 |
aacaacttcaagtggaattcaccatcctggtatacttgaaggatggtttggtgtccattggtggac |
353 |
Q |
| |
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|||||| |||||||||||||||| ||||| |||||||||||||||||| | ||||||||||| |
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| T |
55925130 |
aacaacatcaagtggaattcacc-----ggtatccttgaaggatggtttggtattcattggtggac |
55925070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 5629880 - 5629826
Alignment:
| Q |
315 |
tggtatacttgaaggatggtttggtgtccattggtggaccgggcgtacatttgtt |
369 |
Q |
| |
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|||||| |||||||||||||||||||| || |||||||| ||| | ||||||||| |
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| T |
5629880 |
tggtattcttgaaggatggtttggtgtgcactggtggactgggaggacatttgtt |
5629826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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