View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8281_low_6 (Length: 347)

Name: NF8281_low_6
Description: NF8281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8281_low_6
NF8281_low_6
[»] chr8 (4 HSPs)
chr8 (20-290)||(33376558-33376830)
chr8 (286-334)||(33377379-33377427)
chr8 (204-262)||(8144829-8144887)
chr8 (200-258)||(6403359-6403417)
[»] chr1 (3 HSPs)
chr1 (127-262)||(33069216-33069353)
chr1 (82-152)||(9995467-9995537)
chr1 (86-152)||(10006354-10006420)
[»] chr4 (4 HSPs)
chr4 (82-226)||(24404902-24405041)
chr4 (212-262)||(13437027-13437077)
chr4 (173-234)||(9607752-9607813)
chr4 (109-154)||(9607835-9607880)
[»] chr3 (2 HSPs)
chr3 (109-229)||(13655573-13655695)
chr3 (85-155)||(4609232-4609302)
[»] chr5 (1 HSPs)
chr5 (172-246)||(17001528-17001602)
[»] chr2 (1 HSPs)
chr2 (178-262)||(34813770-34813854)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 33376558 - 33376830
Alignment:
Q  20 aggtaacacctctacatacatacaattcaaccataggtaaatgtactgtccataggtataacactactagaaactcttcatttttctttggattttcatg 119  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33376558 aggtaacacctctacatacattcaattcaaccgtaggtaaatgtactgtccgtaggtataacactactagaaactcttcttttttctttggattttcatg 33376657  T
Q  120 tggaaactaatccgcaggaatagctgaggattttgcggtagcttccc--tgtctgacgatgtttcctgcggattaaaaagctgcaggaacatccgcaggt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  33376658 tggaaactaatccgcaggaatagctgaggattttgcggtagcttccctttgtctcacgaagtttcctgcggattaaaaagctgcaggaacatccgcaggt 33376757  T
Q  218 aactattatattgctgatgactttcctgctgaataattatccaatgagtagtgctattcttgcgattccttag 290  Q
    ||||||||| ||||||| || |||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  33376758 aactattattttgctgaggattttcttgctgaataattatccaatgagtagtgttattcttgcgattccttag 33376830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 33377379 - 33377427
Alignment:
Q  286 cttaggaagttccgcagggattgatgcgatttttcatatagtctctgct 334  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  33377379 cttaggaagttccgcaggaattgatgcgatttttcatatagtctttgct 33377427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 8144887 - 8144829
Alignment:
Q  204 gaacatccgcaggtaactattatattgctgatgactttcctgctgaataattatccaat 262  Q
    ||||||||||||||||||||||||| |||||  | |||||||| |||| ||||||||||    
T  8144887 gaacatccgcaggtaactattatatcgctgagaattttcctgcggaattattatccaat 8144829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 6403417 - 6403359
Alignment:
Q  200 gcaggaacatccgcaggtaactattatattgctgatgactttcctgctgaataattatc 258  Q
    ||||||||||||||||||| ||||||| ||||||| || || ||||| |||| ||||||    
T  6403417 gcaggaacatccgcaggtacctattattttgctgaggatttacctgcggaattattatc 6403359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 262
Target Start/End: Original strand, 33069216 - 33069353
Alignment:
Q  127 taatccgcaggaatagctgaggattttgcggtagcttccct--gtctgacgatgtttcctgcggattaaaaagctgcaggaacatccgcaggtaactatt 224  Q
    ||||||||||||||| ||||||||||||| |  | || |||  ||| ||||| |||||||||||| |   | ||||||||  |||||||| |||||||||    
T  33069216 taatccgcaggaatacctgaggattttgctggggtttaccttagtcagacgaagtttcctgcggagttttatgctgcaggtgcatccgcatgtaactatt 33069315  T
Q  225 atattgctgatgactttcctgctgaataattatccaat 262  Q
    || ||||||| || |||| ||| |||| ||||||||||    
T  33069316 attttgctgaggattttcatgcggaattattatccaat 33069353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 9995537 - 9995467
Alignment:
Q  82 actactagaaactcttcatttttctttggattttcatgtggaaactaatccgcaggaatagctgaggattt 152  Q
    |||||||||||||||  ||||| || |||||||||||| ||||| || |||| ||||||| |||| |||||    
T  9995537 actactagaaactctcaattttcctgtggattttcatgcggaaaatagtccgtaggaatacctgaagattt 9995467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 10006420 - 10006354
Alignment:
Q  86 ctagaaactcttcatttttctttggattttcatgtggaaactaatccgcaggaatagctgaggattt 152  Q
    |||||||||||  | ||| || |||||||||||| ||||| ||||||| ||||||| ||||||||||    
T  10006420 ctagaaactctcgagtttcctgtggattttcatgcggaaaataatccgtaggaatacctgaggattt 10006354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 226
Target Start/End: Original strand, 24404902 - 24405041
Alignment:
Q  82 actactagaaactcttcatttttctttggattttcatgtggaaactaatccgcaggaatagctgaggattttgcggtagcttccct--gtctgacgatgt 179  Q
    |||||||||||||||  ||||| ||   |||||||||||||||| | ||||||| ||||| |||||||||||      ||| ||||  ||| ||||| ||    
T  24404902 actactagaaactctcaattttcctgcagattttcatgtggaaa-tgatccgcatgaatacctgaggatttt------gctgcccttagtcagacgaggt 24404994  T
Q  180 ttcctgcggattaaaaagctgcaggaacatccgcaggtaactattat 226  Q
    |||||||||||| | | || || || |||||||||||||||||||||    
T  24404995 ttcctgcggattcagatgccgctgggacatccgcaggtaactattat 24405041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 13437077 - 13437027
Alignment:
Q  212 gcaggtaactattatattgctgatgactttcctgctgaataattatccaat 262  Q
    ||||||||||||||| ||||||| || |||||||| |||| ||||||||||    
T  13437077 gcaggtaactattattttgctgaggattttcctgcggaattattatccaat 13437027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 9607813 - 9607752
Alignment:
Q  173 acgatgtttcctgcggattaaaaagctgcaggaacatccgcaggtaactattatattgctga 234  Q
    ||||||||||||||| ||| | ||||  |||||| ||||||||||||||| ||| |||||||    
T  9607813 acgatgtttcctgcgaattcataagccacaggaaaatccgcaggtaactactattttgctga 9607752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 9607880 - 9607835
Alignment:
Q  109 ggattttcatgtggaaactaatccgcaggaatagctgaggattttg 154  Q
    ||||||||||| ||||| ||||||||||||||  ||||||||||||    
T  9607880 ggattttcatgaggaaaataatccgcaggaatttctgaggattttg 9607835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 229
Target Start/End: Complemental strand, 13655695 - 13655573
Alignment:
Q  109 ggattttcatgtggaaactaatccgcaggaatagctgaggattttgcggtagct--tccctgtctgacgatgtttcctgcggattaaaaagctgcaggaa 206  Q
    ||||||||||| ||||| ||||| ||||||||| ||  ||||||||| | ||||   || |||||| | | ||||||||||||||    |||||||||||    
T  13655695 ggattttcatgcggaaaataatcagcaggaatatcttgggattttgctgcagctaacccttgtctggcaacgtttcctgcggattgttcagctgcaggaa 13655596  T
Q  207 catccgcaggtaactattatatt 229  Q
    |  |||||||||| |||||||||    
T  13655595 cgcccgcaggtaaatattatatt 13655573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 4609302 - 4609232
Alignment:
Q  85 actagaaactcttcatttttctttggattttcatgtggaaactaatccgcaggaatagctgaggattttgc 155  Q
    ||||||||||||  ||||| ||   |||||| ||| | ||| |||||||||||||||||||||||||||||    
T  4609302 actagaaactctcgattttcctgcagatttttatgcgaaaattaatccgcaggaatagctgaggattttgc 4609232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 17001602 - 17001528
Alignment:
Q  172 gacgatgtttcctgcggattaaaaagctgcaggaacatccgcaggtaactattatattgctgatgactttcctgc 246  Q
    ||||| |||||||||||||| | | || |||||||||||| ||||||| |||||| ||||| | || ||||||||    
T  17001602 gacgaagtttcctgcggatttagatgccgcaggaacatccacaggtaagtattattttgctaaggattttcctgc 17001528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 34813770 - 34813854
Alignment:
Q  178 gtttcctgcggattaaaaagctgcaggaacatccgcaggtaactattatattgctgatgactttcctgctgaataattatccaat 262  Q
    |||||||||| ||| | | || ||||||||||||| ||||||||||||| | |||||  | |||||||| |||| || |||||||    
T  34813770 gtttcctgcgcattcagatgccgcaggaacatccgtaggtaactattatttagctgagaattttcctgcggaattatcatccaat 34813854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University