View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8281_low_7 (Length: 347)

Name: NF8281_low_7
Description: NF8281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8281_low_7
NF8281_low_7
[»] chr6 (2 HSPs)
chr6 (108-280)||(26535289-26535470)
chr6 (21-83)||(26535496-26535558)
[»] chr7 (2 HSPs)
chr7 (244-310)||(47326461-47326527)
chr7 (263-310)||(12480297-12480344)
[»] chr2 (2 HSPs)
chr2 (256-312)||(31902973-31903029)
chr2 (254-305)||(2062256-2062307)
[»] chr4 (4 HSPs)
chr4 (250-309)||(16501182-16501241)
chr4 (250-305)||(31051247-31051302)
chr4 (262-305)||(46699525-46699568)
chr4 (254-312)||(30963877-30963935)
[»] chr8 (4 HSPs)
chr8 (254-312)||(34866646-34866704)
chr8 (251-312)||(9519052-9519113)
chr8 (255-312)||(10551743-10551800)
chr8 (254-302)||(34389612-34389660)
[»] chr3 (1 HSPs)
chr3 (254-305)||(19175917-19175968)


Alignment Details
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 108 - 280
Target Start/End: Complemental strand, 26535470 - 26535289
Alignment:
Q  108 ctattcattttgggatcaatacatgtcgacattaatttgtgaaagactggattaatgcatcaaagtgttcatgta---------aataaggtctgtctga 198  Q
    ||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||    
T  26535470 ctattcattttgggagcgatatatgtcgacattaatttgtgaaagactggattaatgcatcaaagtgttcatgtataatgtataaataaggtctgtctga 26535371  T
Q  199 tagagcaactcactacatattcgtaaagacgcaaacaatagtcaattctaagatttgggttgtgtttccacttcaaatcggc 280  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26535370 tagagcaactcactacatattcgtaaagacgcaaacaatggtcaattctaagatttgggttgtgtttccacttcaaatcggc 26535289  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 26535558 - 26535496
Alignment:
Q  21 aacgaggatctgaatatctttacaatttacaaaattggtgattataatatttggcgtagtagt 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26535558 aacgaggatctgaatatctttacaatttacaaaattggtgattataatatttggcgtagtagt 26535496  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 310
Target Start/End: Complemental strand, 47326527 - 47326461
Alignment:
Q  244 ttctaagatttgggttgtgtttccacttcaaatcggcttcgctgcccgtgtcttgttgttggttttc 310  Q
    ||||| ||||| |||||||||| |||||||||||||  ||||||||||||| |||||||||| ||||    
T  47326527 ttctatgatttcggttgtgttttcacttcaaatcggtgtcgctgcccgtgttttgttgttggatttc 47326461  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 12480297 - 12480344
Alignment:
Q  263 tttccacttcaaatcggcttcgctgcccgtgtcttgttgttggttttc 310  Q
    ||||||||||||| |||| ||||||| ||||| |||||||||||||||    
T  12480297 tttccacttcaaaccggcgtcgctgctcgtgttttgttgttggttttc 12480344  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 31903029 - 31902973
Alignment:
Q  256 ggttgtgtttccacttcaaatcggcttcgctgcccgtgtcttgttgttggttttcgt 312  Q
    |||||||||||| ||||||| |||| ||||||||||||| |||||||||| ||||||    
T  31903029 ggttgtgtttccgcttcaaaccggcgtcgctgcccgtgttttgttgttgggtttcgt 31902973  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 2062256 - 2062307
Alignment:
Q  254 tgggttgtgtttccacttcaaatcggcttcgctgcccgtgtcttgttgttgg 305  Q
    |||||||||||||| ||||| | |||| ||||||||||||| ||||||||||    
T  2062256 tgggttgtgtttccgcttcagaccggcgtcgctgcccgtgttttgttgttgg 2062307  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 309
Target Start/End: Original strand, 16501182 - 16501241
Alignment:
Q  250 gatttgggttgtgtttccacttcaaatcggcttcgctgcccgtgtcttgttgttggtttt 309  Q
    ||||||||||||| |||||||||||| |||| ||||||||| |||  |||||||||||||    
T  16501182 gatttgggttgtgattccacttcaaaccggcgtcgctgcccatgttgtgttgttggtttt 16501241  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 31051302 - 31051247
Alignment:
Q  250 gatttgggttgtgtttccacttcaaatcggcttcgctgcccgtgtcttgttgttgg 305  Q
    |||||||||||||| ||| ||||| | |||| ||||||||||||| ||||||||||    
T  31051302 gatttgggttgtgtgtccgcttcagaccggcgtcgctgcccgtgttttgttgttgg 31051247  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 305
Target Start/End: Complemental strand, 46699568 - 46699525
Alignment:
Q  262 gtttccacttcaaatcggcttcgctgcccgtgtcttgttgttgg 305  Q
    |||||| |||||||||||| ||||||||||||| ||||||||||    
T  46699568 gtttccgcttcaaatcggcgtcgctgcccgtgtattgttgttgg 46699525  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 312
Target Start/End: Original strand, 30963877 - 30963935
Alignment:
Q  254 tgggttgtgtttccacttcaaatcggcttcgctgcccgtgtcttgttgttggttttcgt 312  Q
    ||||||||| |||||||||||| |||| ||| ||||||||| |||| ||||| ||||||    
T  30963877 tgggttgtggttccacttcaaaccggcgtcgatgcccgtgttttgtggttggatttcgt 30963935  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 34866704 - 34866646
Alignment:
Q  254 tgggttgtgtttccacttcaaatcggcttcgctgcccgtgtcttgttgttggttttcgt 312  Q
    ||||||||| |||| ||||||| |||| ||||||||||||| |||||||||| ||||||    
T  34866704 tgggttgtggttccgcttcaaaccggcgtcgctgcccgtgttttgttgttggatttcgt 34866646  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 9519052 - 9519113
Alignment:
Q  251 atttgggttgtgtttccacttcaaatcggcttcgctgcccgtgtcttgttgttggttttcgt 312  Q
    |||||||||||||| || ||||||| | || ||||||||||||| |||||||||| ||||||    
T  9519052 atttgggttgtgttcccgcttcaaaccagcgtcgctgcccgtgttttgttgttgggtttcgt 9519113  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 10551743 - 10551800
Alignment:
Q  255 gggttgtgtttccacttcaaatcggcttcgctgcccgtgtcttgttgttggttttcgt 312  Q
    |||| |||||||| |||||||||||| ||||||||||||  |||||||||| ||||||    
T  10551743 gggtcgtgtttccgcttcaaatcggcgtcgctgcccgtgctttgttgttgggtttcgt 10551800  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 34389660 - 34389612
Alignment:
Q  254 tgggttgtgtttccacttcaaatcggcttcgctgcccgtgtcttgttgt 302  Q
    ||||||||| |||| ||||||| |||| ||||||||||||| |||||||    
T  34389660 tgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgt 34389612  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 19175917 - 19175968
Alignment:
Q  254 tgggttgtgtttccacttcaaatcggcttcgctgcccgtgtcttgttgttgg 305  Q
    ||||||||| |||| ||||||| |||| ||||||||||||| ||||||||||    
T  19175917 tgggttgtggttcctcttcaaaccggcatcgctgcccgtgttttgttgttgg 19175968  T

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