View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8282_high_4 (Length: 248)
Name: NF8282_high_4
Description: NF8282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8282_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 7354638 - 7354397
Alignment:
| Q |
7 |
cattattctcctcttgttcaaagcgcaacctttcagcatttagttgcataatttaataaaaaataacatcaaccaattcataagttaatatgccaatcaa |
106 |
Q |
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| T |
7354638 |
cattattttcctcttgttcaaagcgcaacctttcagcatttagttgcataatctaataaaaaataacatcaaccaattcataagttaatatgccaatcaa |
7354539 |
T |
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| Q |
107 |
aattattaagtaccaaaatgaaaaatgattgttttacgagttttgatattaccaagggagatatctgccgagggggacgaagacattggaggtctaccat |
206 |
Q |
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| T |
7354538 |
aattattaagtaccaaaataaaaaatgattgttttacaagttttgatattaccaagggagatatctgccgagggggacgaagacattggaggtctgccat |
7354439 |
T |
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| Q |
207 |
tgttgcagtcacctcaccggtttttacaagcggatcatactt |
248 |
Q |
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| T |
7354438 |
tgttgcagtcacctcaccggtttttacaagtggatcatactt |
7354397 |
T |
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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 15493990 - 15493853
Alignment:
| Q |
18 |
tcttgttcaaagcgcaacctttcagcatttagttgcataatttaataaaaaataacatcaaccaattcataagttaatatgccaatcaaaattattaagt |
117 |
Q |
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| T |
15493990 |
tcttgttcgaaacgcaacattttagtgtttagttgcataatctaataacagatgacaataaccaattcataagttaatatgttgatcaaaaatatgaatg |
15493891 |
T |
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| Q |
118 |
accaaaatgaaaaatgattgttttacgagttttgatat |
155 |
Q |
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| T |
15493890 |
gtcaaaatgaaaaataattgttttacgagttttgatat |
15493853 |
T |
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