View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8282_high_7 (Length: 229)
Name: NF8282_high_7
Description: NF8282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8282_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 24436044 - 24435853
Alignment:
| Q |
15 |
atgaagcaaaagtatccttcttctcaaaccatcaaaggatgcgccctaaattatgataaagtggttgatgagttacaaattgcgttggatgactattcgg |
114 |
Q |
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| T |
24436044 |
atgaagaaaaagtatccttcttctcaaaccatcaaaggatgtgccctaaattatgataaagtggttgatgagttacaaattgcgttggatgagtattcgg |
24435945 |
T |
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| Q |
115 |
aaactataagcttggatgttgcatatgctagtgatgcacttgaagagtgcgaacatagcttagttaatgaaaagattgttaatacttcttcc |
206 |
Q |
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| T |
24435944 |
aaactataagcttggatgttgcatatgctagtgatgcacttgaagagtgcgaacatagcttagttaatgaaaagattgttaatacttcttcc |
24435853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 25802826 - 25802781
Alignment:
| Q |
161 |
gtgcgaacatagcttagttaatgaaaagattgttaatacttcttcc |
206 |
Q |
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| T |
25802826 |
gtgcgaacgtagcttagctaatgaaaagattgttaatatttcttcc |
25802781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 13436152 - 13436233
Alignment:
| Q |
119 |
tataagcttggatgttgcatatgctagtgatgcacttgaagagtgcgaacatagcttagttaatgaaaagattgttaatacttcttcc |
206 |
Q |
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| T |
13436152 |
tataagcttggatgttgtatatgcttttgatgcacttgaaaagtg------tagcttagttaatgaaaagatttttaatatttcttcc |
13436233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 206
Target Start/End: Complemental strand, 35079490 - 35079404
Alignment:
| Q |
120 |
ataagcttggatgttgcatatgctagtgatgcacttgaagagtgcgaacatagcttagttaatgaaaagattgttaatacttcttcc |
206 |
Q |
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| T |
35079490 |
ataagcttggctgtcaaatatgctagcgatgcacttgacatgtgtgaacgtagcttggctaacgaaaagattgttaatacttcttcc |
35079404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 35074503 - 35074435
Alignment:
| Q |
138 |
tatgctagtgatgcacttgaagagtgcgaacatagcttagttaatgaaaagattgttaatacttcttcc |
206 |
Q |
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| T |
35074503 |
tatgctagcgatgcacttgacatgtgtgaacgtagcttggctgatgaaaagattgtcaatacttcttcc |
35074435 |
T |
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