View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8282_low_3 (Length: 250)
Name: NF8282_low_3
Description: NF8282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8282_low_3 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 36030162 - 36030409
Alignment:
| Q |
17 |
tgttgaatggtgacatgagaatgaatgataaatattgttttgaaagcttggattcaatttcacgtttctcatcctaatttatgtttggtgtcactt---- |
112 |
Q |
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| T |
36030162 |
tgttgaatggtgacatgagaatgaatgataaatattgttttgaaagcttggattcaatttcacgtttctcatcctaatttatgtttggtgtaacttgaga |
36030261 |
T |
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| Q |
113 |
----------tggttttgacatgttggtgtcttttagtactattaacacctcattattcctatctatcaaattactagggtgaacatttttaacacgaca |
202 |
Q |
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| T |
36030262 |
tgtaatcaattggttttgacatgtttgtgtcttttagtactattaacacctcattattcctatctatcaatttactagggtgaacatttttaacacgaca |
36030361 |
T |
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| Q |
203 |
aatggatgaattctccattgggtggaaagggagatccttctataagga |
250 |
Q |
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| T |
36030362 |
aatgaatgaattctccattgggtggaaagagagatccttctataagga |
36030409 |
T |
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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 45348316 - 45348224
Alignment:
| Q |
158 |
attcctatctatcaaattactagggtgaacatttttaacacgacaaatggatgaattctccattgggtggaaagggagatccttctataagga |
250 |
Q |
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| T |
45348316 |
attcctatccttcagattactgtggtgaacatttttaacaggacaaatggatgagttctccattgggtggaaagtgagatcattctctaagga |
45348224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 45357795 - 45357703
Alignment:
| Q |
158 |
attcctatctatcaaattactagggtgaacatttttaacacgacaaatggatgaattctccattgggtggaaagggagatccttctataagga |
250 |
Q |
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| T |
45357795 |
attcctatccttcagattactgtggtgaacatttttaacaggacaaatggatgagttctccattgggtggaaagtgagatcattctctaagga |
45357703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 45119693 - 45119784
Alignment:
| Q |
158 |
attcctatctatcaaattactagggtgaacatttttaacacgacaaatggatgaattctccattgggtggaaagggagatccttctataagga |
250 |
Q |
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| T |
45119693 |
attcctatccttcagattactatggtgaacatttttaacaggacaa-tggatgagttctccattgggtggaaagtgaaatcattctctaagga |
45119784 |
T |
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