View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8282_low_9 (Length: 206)
Name: NF8282_low_9
Description: NF8282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8282_low_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 24436227 - 24436025
Alignment:
| Q |
4 |
ttgtataaaagtgtatgtaaagaaactattaaacaagacccccactatgaacaaccttgcctgaaacttttagaaccctacccacaaattacttctgcca |
103 |
Q |
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| T |
24436227 |
ttgtataaaagtgtatgtaaagaaactaataaacaagacccccactatgaacaaccttgcctgaaacttttagaaccctacccacaaattacttctgcca |
24436128 |
T |
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| Q |
104 |
aagattatctaactttttcaagattatttttaaggattgtggcaatacataatgcaacaaaagcccaacatcaagtcaaagaaatgaagcaaaagtatcc |
203 |
Q |
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| T |
24436127 |
aagattatctaactttttcaagattatttttaaggattgtggcaatagagaatgcaacaaaagcccaacatcaagtcaaagaaatgaagaaaaagtatcc |
24436028 |
T |
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| Q |
204 |
ttc |
206 |
Q |
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||| |
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| T |
24436027 |
ttc |
24436025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 73 - 192
Target Start/End: Original strand, 23995311 - 23995430
Alignment:
| Q |
73 |
ttagaaccctacccacaaattacttctgccaaagattatctaactttttcaagattatttttaaggattgtggcaatacataatgcaacaaaagcccaac |
172 |
Q |
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| T |
23995311 |
ttagaagcctaccctcaaattacttcgaccgaagattatcttacattttccagattatatctaaagattgtggcaataaagaatgcaggaaaagctcaac |
23995410 |
T |
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| Q |
173 |
atcaagtcaaagaaatgaag |
192 |
Q |
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| T |
23995411 |
atcaagtcaaagaaatgaag |
23995430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 203
Target Start/End: Original strand, 13435909 - 13436064
Alignment:
| Q |
48 |
ctatgaacaaccttgcctgaaacttttagaaccctacccacaaattacttctgccaaagattatctaactttttcaagattatttttaaggattgtggca |
147 |
Q |
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| T |
13435909 |
ctatgaacaaccttgcttgaaacttttagaaacctacccacaaattacttcagccatagattatcttaccttttcaagattatttttaaggattgtggca |
13436008 |
T |
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| Q |
148 |
atacataatgcaacaaaagcccaacatcaagtcaaagaaatgaagcaaaagtatcc |
203 |
Q |
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||| ||||||||||||||| ||||||| ||||||||||||||| | |||| ||||| |
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| T |
13436009 |
atagataatgcaacaaaagtccaacataaagtcaaagaaatgacgaaaaaatatcc |
13436064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 51 - 185
Target Start/End: Complemental strand, 35074762 - 35074628
Alignment:
| Q |
51 |
tgaacaaccttgcctgaaacttttagaaccctacccacaaattacttctgccaaagattatctaactttttcaagattatttttaaggattgtggcaata |
150 |
Q |
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|||||||| ||| || |||||| ||||| | ||||| |||||||||| | |||||||||||||||||| || | |||||||| ||||||||||||| |
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| T |
35074762 |
tgaacaacgttgtctcaaacttatagaagcttaccctcaaattactttgatcgaagattatctaactttttgcaggtcatttttaaagattgtggcaata |
35074663 |
T |
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| Q |
151 |
cataatgcaacaaaagcccaacatcaagtcaaaga |
185 |
Q |
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| T |
35074662 |
gagaaggcagtaaaatcccaacaacaagttaaaga |
35074628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 188
Target Start/End: Complemental strand, 35079680 - 35079594
Alignment:
| Q |
102 |
caaagattatctaactttttcaagattatttttaaggattgtggcaatacataatgcaacaaaagcccaacatcaagtcaaagaaat |
188 |
Q |
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| T |
35079680 |
caaagattatctaaccttttgcaggtcctttttaaagactgtggcaataaagaaggcaataaaatcccaacatcgagtcaaagaaat |
35079594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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