View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8283_high_1 (Length: 714)
Name: NF8283_high_1
Description: NF8283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8283_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 19 - 703
Target Start/End: Original strand, 53603170 - 53603867
Alignment:
| Q |
19 |
atttgtgtgattaataactggttttttaattacatgtgatataattgttatccatccatattctaatttgcagcaagattatcactcaagcgtcaattgt |
118 |
Q |
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| T |
53603170 |
atttgtatgattaataactggtttttcaattacatgtgatataattgttatccatccatattctaatttgcagcaagattatcactcaagcgtcaattgt |
53603269 |
T |
|
| Q |
119 |
tgcgttcttcagcaaccttgcagatgttggccttcatggttcaatgatggtattttatgattttcaagttttatcatgtattttttaaccttaacttagt |
218 |
Q |
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| T |
53603270 |
tgcgttcttcagcaaccttgcagatgttggccttcatggttcaatgatggtatgttatgattttcaagttttatcatgtattttttaaccttaacttagt |
53603369 |
T |
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| Q |
219 |
ttgtgatgccactctattttttgtgtgcagtattacttaaaggctcggtttcattttgataagaatcactttgctgacttaatgatcatttctggtattg |
318 |
Q |
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| T |
53603370 |
ttgtgatgccactctattttttgtgtgcagtattacttaaaggctcggtttcattttgataagaatcactttgctgacttaatgatcatttctggtattg |
53603469 |
T |
|
| Q |
319 |
cagggactgtgtcacaggtaatttttgtaagaagtgattttagttgtcaaatatcacctat-----------gttttgtcttgtcaaatctacaatttgt |
407 |
Q |
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| T |
53603470 |
cagggactgtgtcacaggtaatttttgtaagacgtgattttagttgtcaaatatcacctatgtttagtttacgttttgtcttgtcaaatctacaatttgt |
53603569 |
T |
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| Q |
408 |
ttgagtttattgt-aaatattaattatcaaacattgttgatcacagctttttcttatgcctatttttgctcctactttgggcgaggcaaggcttctatcg |
506 |
Q |
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| T |
53603570 |
ttgagtttattgtaaaatattaa-tatcaaacattgttgatcacagctttttcttatgcctatttttgctcctactttgggcgaggcaaggcttctatcg |
53603668 |
T |
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| Q |
507 |
attggactcttttttcactgtgtacatgtaagcatttatccctttgtaattttataagt--nnnnnnnnntacacatttttgtaaattctaaattagtgc |
604 |
Q |
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| T |
53603669 |
attggactcttttttcactgtgtacatgtaagcatttatccttttgtaattttataagtaaaaaaaaaaatacacatttttgtaaattctaaattagtgc |
53603768 |
T |
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| Q |
605 |
tatcaaattgaatgcagatgttcatttacagcatagcatggtcctcatgggtatgtcttttgctactctattgctaattacaatttacaagttcatctc |
703 |
Q |
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| T |
53603769 |
tatcaaattgaatgcagatgttcatttacagcatagcatggtcctcatgggtatgtcttttgctactctattgctaattacaatttacaagttcatctc |
53603867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 588 - 680
Target Start/End: Complemental strand, 39170622 - 39170530
Alignment:
| Q |
588 |
aaattctaaattagtgctatcaaattgaatgcagatgttcatttacagcatagcatggtcctcatgggtatgtcttttgctactctattgcta |
680 |
Q |
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||||| |||||||||| |||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
39170622 |
aaattataaattagtgttatcaaattgaatgtagatgttcatttacagtatagcatggtcctcttgggtatgtctttagctactctattgcta |
39170530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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