View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8283_high_12 (Length: 228)
Name: NF8283_high_12
Description: NF8283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8283_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 38629645 - 38629855
Alignment:
| Q |
1 |
cttcatcaattcaagggtatatgtgcaatccagtgtaatagaacatgaaatagtgaattactcttcgaattatatatgttggattggatcatttcaatat |
100 |
Q |
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| T |
38629645 |
cttcatcaattcaagggtatatgtgcaatccagtgtaatagaacatgaaatagtgaattactcttcgaattatatatgttggattggatcatttcaatat |
38629744 |
T |
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| Q |
101 |
ttactgcctacagatttggttcttatttggtgactaattattcagctgacctcttcaaattgtatgcagtagaactagtccgattgcaagaacattttta |
200 |
Q |
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| T |
38629745 |
ttactgcctatagatttggttcttatttggtgactaattattcggcagacctcttcaaattgtatgcagtagaactagtctgattgcaagaacattttta |
38629844 |
T |
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| Q |
201 |
caggaaatact |
211 |
Q |
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| T |
38629845 |
caggaaatact |
38629855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 166
Target Start/End: Complemental strand, 38696608 - 38696449
Alignment:
| Q |
5 |
atcaattcaagggtatatgtgcaatccagtgtaatagaacatgaaa---tagtgaattact---cttcgaattatatatgttggattggatcatttcaat |
98 |
Q |
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| T |
38696608 |
atcaattcaagtgtatatgtgaaatcaagtgtaataaaacgtgaaaaggtagtgaattactactctttgaattatgtctgttggat-----cctttcaaa |
38696514 |
T |
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| Q |
99 |
atttactgcctacagatttggttcttatttggtgactaattattcagctgacctcttcaaattgtatg |
166 |
Q |
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| T |
38696513 |
atttactccttacagatttggttgtt---tgatgacttattatccagttgacctcttcaaattgtatg |
38696449 |
T |
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