View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8283_high_2 (Length: 638)
Name: NF8283_high_2
Description: NF8283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8283_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 87 - 523
Target Start/End: Original strand, 52607137 - 52607571
Alignment:
| Q |
87 |
taaagccggccatttctgtttaaacgggaaggttacttgcccatcttcctatctttttcaactattcgcacccccctttcccactttgaaaaggtgcaaa |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52607137 |
taaagccggccatttctgtttaaacgggaaggttacttgcccatcttcctatctttttcaactattcgcacccccctttcccactttgaaaaggtgcaaa |
52607236 |
T |
|
| Q |
187 |
taaaaaggtgaagaggtcagcgctaagtgatatattacctatatgggttagtgtaagagtgatgataaaatataatttgattaatagatggctttacatt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
52607237 |
taaaaaggtgaagaggtcagcgctaagt-atatattacctatatgggttagtgtaagagtgatgataaaatataatttgattactagatggctttacatt |
52607335 |
T |
|
| Q |
287 |
ttaatgattcatttatgtttatagaatagattttataaaaacacttttgaaaatacaattacattttatgaaatnnnnnnntagttttgcataaagctct |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
52607336 |
ttaatgattcatttatgtttatagaatagattttataaaaacacttttgagaatacaattacattt-atgaaataaaaaaatagttgtgcataaagctct |
52607434 |
T |
|
| Q |
387 |
atcccaatcccaagaatgttaatgttattgcattttcaaaactgattttgaatttaggctatatgttatgtttagttaggcagaaagaaacctgaatatc |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52607435 |
atcccaatcccaagaatgttaatgttattgcattttcaaaactgattttgaatctaggctatatgttatgtttagttaggcagaaagaaacctgaatatc |
52607534 |
T |
|
| Q |
487 |
tcacacaagtgctcttagataagtatgtgtgtctata |
523 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52607535 |
tcacacaagtgctcttagataagtatgtgtgtctata |
52607571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 52606472 - 52606546
Alignment:
| Q |
15 |
cagagacaacctgggatgataggttaactcaatggaattgccgtggctatgaaacgacagttgatactacattaa |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52606472 |
cagagacaacctgggatgataggttaactcaatggaattgccgtggctatgaaacgacagttgatactacattaa |
52606546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 550 - 619
Target Start/End: Original strand, 52608018 - 52608087
Alignment:
| Q |
550 |
atataatgatgataacacannnnnnnagtaaaaagtaaattttaaatgatattagcaaaagagtagcatt |
619 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52608018 |
atataatgatgataacacatttttttagtaaaaagtaaattttaaatgatattagcaaaagagtagcatt |
52608087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University