View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8283_high_3 (Length: 607)
Name: NF8283_high_3
Description: NF8283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8283_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 516; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 9 - 591
Target Start/End: Original strand, 38321901 - 38322480
Alignment:
| Q |
9 |
tttggtgttaccgctccaaggttattgaaggttttttggaatacagctaagagaaagaaatgtctacacagtccctttggtgcaattgcacaataagtaa |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38321901 |
tttgatgttaccgctccaaggttattgaaggttttttggaatacagctaagagaaagaaatgtctacacagtccctttggtgcaattgcacaataagtaa |
38322000 |
T |
|
| Q |
109 |
tatcgagaatttagctatggtcatgagcccttcacaggtgagtcagtcaaaacccatgtttgctggttgatgtttattctttccatatgggtgagcctcc |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38322001 |
tatcgagaatttagctatggtcatgagcccttcacaggtgagtcagtcaaaacccatgtttgccagttgatgtttattctttccatatgggtgagcctcc |
38322100 |
T |
|
| Q |
209 |
cttgaagatgttgcatctagtattttaacgaggctgtttaatacctcaactgttgcctaaacaaaatcctcagtagtaatttttcagatttttatgagga |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38322101 |
cttgaagatgttgcatctagtattttaacgaggctgtttaatatctcaactgttgcctaaaaaaaatcctcagtagtaatttttcagatttttatgagga |
38322200 |
T |
|
| Q |
309 |
ctatattattcattttgaaatttgaattatcaagcctataatattttattgcaacacatttgctgtgtcatagtcatactgaggcaacttcggccactgg |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38322201 |
ctatattattcattttgaaatttgaattatcaagcctataatattttattgcaacacatttgctgtgtcatagtcgtactgaggcaacttcggccactgg |
38322300 |
T |
|
| Q |
409 |
aagtcttttgcacttcttcttcttctaacattcaaatgttctgtcatttaccttattagttttctcttgatttttcattgtatcccatacacccagagaa |
508 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38322301 |
aagtcttttgca---cttcttcttctaacattcaaatgttctgtcatttaccttcttagttttctcttgatttttcattgtatcccatacacccagagaa |
38322397 |
T |
|
| Q |
509 |
gtcgagttgtttctctcgacacaagaattttcatagttttacctttttattttatnnnnnnnttctgttacagccatgtagtt |
591 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38322398 |
gtcgagttgtttctctcgacacaagaattttcatagttttacctttttattttataaaaaaactctgttacagccatgtagtt |
38322480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 38157086 - 38156926
Alignment:
| Q |
21 |
gctccaaggttattgaaggttttttggaatacagctaagagaaagaaatgtctacacagtccctttggtgcaattgcacaataagta-atatcgagaatt |
119 |
Q |
| |
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||||||| |||||||||| ||||||||||| ||||||| ||| | ||| || || |||||||||| |||||||| || | || |||| ||||||| |
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| T |
38157086 |
gctccaatgttattgaagcttttttggaatgcagctaaaagagaaaaaaatcagca---tccctttggtccaattgcaagattactacatattgagaatt |
38156990 |
T |
|
| Q |
120 |
tagctatggtcatgagcccttcacaggtgagtcagtcaaaacccatgtttgctggttgatgttt |
183 |
Q |
| |
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|| ||||| | |||||| |||||||||||||||| |||||| ||| ||||||| |||||||||| |
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| T |
38156989 |
tatctatgattatgagcacttcacaggtgagtcactcaaaaaccaagtttgcttgttgatgttt |
38156926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 191
Target Start/End: Complemental strand, 38149229 - 38149146
Alignment:
| Q |
108 |
atatcgagaatttagctatggtcatgagcccttcacaggtgagtcagtcaaaacccatgtttgctggttgatgtttattctttc |
191 |
Q |
| |
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||||| |||||||| ||||| |||| ||| ||||||||||||||| |||||| ||| |||| |||||||||||||||| |||| |
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| T |
38149229 |
atatccagaatttatctatgatcataagcacttcacaggtgagtcgctcaaaaaccacgttttctggttgatgtttattgtttc |
38149146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 38172480 - 38172402
Alignment:
| Q |
108 |
atatcgagaatttagctatggtcatgagcccttcacaggtgagtcagtcaaaacccatgtttgctggttgatgtttatt |
186 |
Q |
| |
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|||| ||||| ||| ||||| |||||||| |||||||||||||| ||| ||||| |||||||| || |||||||||||| |
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| T |
38172480 |
atattgagaacttaactatgatcatgagcacttcacaggtgagtaagttaaaactcatgtttgttgcttgatgtttatt |
38172402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 42797587 - 42797637
Alignment:
| Q |
136 |
cccttcacaggtgagtcagtcaaaacccatgtttgctggttgatgtttatt |
186 |
Q |
| |
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|||||||| ||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
42797587 |
cccttcactggtgagtcactcaaaacccatgtttgctagttgatgtttatt |
42797637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 43028400 - 43028478
Alignment:
| Q |
108 |
atatcgagaatttagctatggtcatgagcccttcacaggtgagtcagtcaaaacccatgtttgctggttgatgtttatt |
186 |
Q |
| |
|
|||| |||||||||||| || ||| ||| |||||||||||||||| ||||||||| |||||||| |||| |||||||| |
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| T |
43028400 |
atattgagaatttagctgtgaacatcagcacttcacaggtgagtcactcaaaacccgtgtttgctagttggtgtttatt |
43028478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 45999825 - 45999761
Alignment:
| Q |
108 |
atatcgagaatttagctatggtcatgagcccttcacaggtgagtcagtcaaaacccatgtttgct |
172 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||||||||||||||| ||| ||| ||||||||||| |
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| T |
45999825 |
atattgagaatttagctatgatcatcagcccttcacaggtgagtttgtctaaatccatgtttgct |
45999761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 38187195 - 38187148
Alignment:
| Q |
21 |
gctccaaggttattgaaggttttttggaatacagctaagagaaagaaa |
68 |
Q |
| |
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|||||||| ||||||||||||||||||||| ||||||| ||| ||||| |
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| T |
38187195 |
gctccaagtttattgaaggttttttggaatgcagctaatagagagaaa |
38187148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 38285522 - 38285464
Alignment:
| Q |
108 |
atatcgagaatttagctatggtcatgagcccttcacaggtgagtcagtcaaaacccatgt |
167 |
Q |
| |
|
|||| ||||||||||||||| ||||| || ||||||||||||| ||||||||||||||| |
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| T |
38285522 |
atattgagaatttagctatgaccatgacccattcacaggtgagt-agtcaaaacccatgt |
38285464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 37884240 - 37884297
Alignment:
| Q |
108 |
atatcgagaatttagctatggtcatgagcccttcacaggtgagtcagtcaaaacccat |
165 |
Q |
| |
|
|||| |||| |||||| |||||||||||||||||| |||||||| ||||||| |||| |
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|
| T |
37884240 |
atattgagactttagcaatggtcatgagcccttcataggtgagttggtcaaaatccat |
37884297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 4163570 - 4163428
Alignment:
| Q |
21 |
gctccaaggttattgaaggttttttggaatacagctaagagaaagaaatgtctacacagtccctttggtgcaattgcacaataa-gtaatatcgagaatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| | ||| || || ||| || ||||||||||||| || || | || || | |||||| |
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|
| T |
4163570 |
gctccaaggttattgaaggttttttggaatgcaactaaggaagagagatatccacatcatctctttggtgcaattccaagatcacgtcatgttcagaatt |
4163471 |
T |
|
| Q |
120 |
tagctatggtcatgagcccttcacaggtgagtcagtcaaaacc |
162 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||| |
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| T |
4163470 |
tagctatgatcatgatgccttcacaggtgagtcagtcaaaacc |
4163428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 4225191 - 4225049
Alignment:
| Q |
21 |
gctccaaggttattgaaggttttttggaatacagctaagagaaagaaatgtctacacagtccctttggtgcaattgcacaataa-gtaatatcgagaatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| | ||| || || ||| || ||||||||||||| || || | || || | |||||| |
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|
| T |
4225191 |
gctccaaggttattgaaggttttttggaatgcaactaaggaagagagatatccacatcatctctttggtgcaattccaagatcacgtcatgttcagaatt |
4225092 |
T |
|
| Q |
120 |
tagctatggtcatgagcccttcacaggtgagtcagtcaaaacc |
162 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||| |
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|
| T |
4225091 |
tagctatgatcatgatgccttcacaggtgagtcagtcaaaacc |
4225049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 2222928 - 2222867
Alignment:
| Q |
108 |
atatcgagaatttagctatggtcatgagcccttcacaggtgagtcagtcaaaacccatgtttg |
170 |
Q |
| |
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|||| ||||||||||||||| ||| |||| ||||||||||||| ||||||||| |||||||| |
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|
| T |
2222928 |
atattgagaatttagctatgaccattagccattcacaggtgagt-agtcaaaactcatgtttg |
2222867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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