View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8283_high_6 (Length: 462)

Name: NF8283_high_6
Description: NF8283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8283_high_6
NF8283_high_6
[»] chr5 (34 HSPs)
chr5 (9-125)||(29311868-29311984)
chr5 (181-263)||(29311782-29311865)
chr5 (40-117)||(24476294-24476370)
chr5 (15-103)||(32572764-32572853)
chr5 (372-436)||(29311563-29311626)
chr5 (276-313)||(29311716-29311753)
chr5 (335-371)||(4165052-4165088)
chr5 (335-371)||(4874244-4874280)
chr5 (335-371)||(6219190-6219226)
chr5 (335-371)||(9640533-9640569)
chr5 (335-371)||(11968869-11968905)
chr5 (335-371)||(12878119-12878155)
chr5 (335-371)||(16371471-16371507)
chr5 (335-371)||(16496693-16496729)
chr5 (335-371)||(18625614-18625650)
chr5 (335-371)||(23074643-23074679)
chr5 (335-371)||(23311172-23311208)
chr5 (335-371)||(25328303-25328339)
chr5 (335-371)||(26266998-26267034)
chr5 (335-371)||(26802427-26802463)
chr5 (335-371)||(26809977-26810013)
chr5 (335-371)||(26825004-26825040)
chr5 (335-371)||(27389926-27389962)
chr5 (335-371)||(29119699-29119735)
chr5 (335-371)||(34856674-34856710)
chr5 (335-371)||(34930318-34930354)
chr5 (335-367)||(36185234-36185266)
chr5 (335-371)||(36569372-36569408)
chr5 (335-371)||(36790314-36790350)
chr5 (335-371)||(36854157-36854193)
chr5 (335-371)||(37191337-37191373)
chr5 (335-371)||(39528023-39528059)
chr5 (335-371)||(41071155-41071191)
chr5 (335-371)||(42448304-42448340)
[»] chr1 (22 HSPs)
chr1 (15-107)||(49318741-49318834)
chr1 (335-371)||(21522410-21522446)
chr1 (122-218)||(4923447-4923539)
chr1 (337-371)||(13980307-13980341)
chr1 (335-371)||(270322-270358)
chr1 (335-371)||(301009-301045)
chr1 (335-371)||(7599523-7599559)
chr1 (335-371)||(18089768-18089804)
chr1 (335-371)||(19338177-19338213)
chr1 (335-371)||(20164072-20164108)
chr1 (335-371)||(25820949-25820985)
chr1 (335-371)||(33845603-33845639)
chr1 (335-371)||(33948339-33948375)
chr1 (335-371)||(35758368-35758404)
chr1 (335-371)||(39606498-39606534)
chr1 (335-371)||(40958573-40958609)
chr1 (335-371)||(43025984-43026020)
chr1 (335-371)||(43500142-43500178)
chr1 (335-371)||(43676023-43676059)
chr1 (335-371)||(48392049-48392085)
chr1 (335-371)||(49500954-49500990)
chr1 (335-371)||(50248122-50248158)
[»] scaffold0288 (1 HSPs)
scaffold0288 (48-117)||(22162-22231)
[»] chr6 (17 HSPs)
chr6 (48-117)||(4661992-4662061)
chr6 (336-371)||(4996965-4997000)
chr6 (337-371)||(8116747-8116781)
chr6 (335-372)||(32643723-32643760)
chr6 (335-371)||(735536-735572)
chr6 (335-371)||(1855099-1855135)
chr6 (335-371)||(4129038-4129074)
chr6 (335-371)||(4480567-4480603)
chr6 (335-371)||(7098899-7098935)
chr6 (335-371)||(8448141-8448177)
chr6 (335-371)||(8456945-8456981)
chr6 (335-371)||(10181138-10181174)
chr6 (335-371)||(10330898-10330934)
chr6 (335-371)||(12795018-12795054)
chr6 (335-371)||(18861766-18861802)
chr6 (335-371)||(31444291-31444327)
chr6 (335-371)||(32107834-32107870)
[»] scaffold0008 (1 HSPs)
scaffold0008 (335-371)||(39312-39348)
[»] chr8 (28 HSPs)
chr8 (335-371)||(2733708-2733744)
chr8 (336-371)||(20993630-20993665)
chr8 (337-371)||(34143355-34143389)
chr8 (335-371)||(2442853-2442889)
chr8 (335-371)||(4312226-4312262)
chr8 (335-371)||(4430734-4430770)
chr8 (335-371)||(4977033-4977069)
chr8 (335-371)||(6317393-6317429)
chr8 (335-371)||(6844984-6845020)
chr8 (335-371)||(10096705-10096741)
chr8 (335-371)||(14243792-14243828)
chr8 (335-371)||(16501740-16501776)
chr8 (335-371)||(18040229-18040265)
chr8 (335-371)||(20150314-20150350)
chr8 (335-371)||(23681103-23681139)
chr8 (335-371)||(24655067-24655103)
chr8 (335-371)||(25063433-25063469)
chr8 (335-371)||(26675650-26675686)
chr8 (335-371)||(26690787-26690823)
chr8 (335-371)||(27544915-27544951)
chr8 (335-371)||(27817448-27817484)
chr8 (335-371)||(27849742-27849778)
chr8 (335-371)||(29513968-29514004)
chr8 (335-371)||(34540063-34540099)
chr8 (335-371)||(34711554-34711590)
chr8 (335-371)||(35421618-35421654)
chr8 (335-371)||(38953479-38953515)
chr8 (335-371)||(40772564-40772600)
[»] chr7 (21 HSPs)
chr7 (335-371)||(1582617-1582653)
chr7 (335-371)||(1869909-1869945)
chr7 (335-371)||(2354794-2354830)
chr7 (335-371)||(3497516-3497552)
chr7 (335-371)||(3861335-3861371)
chr7 (335-371)||(4674308-4674344)
chr7 (335-371)||(4887512-4887548)
chr7 (335-371)||(12014731-12014767)
chr7 (335-371)||(16816784-16816820)
chr7 (335-371)||(23789414-23789450)
chr7 (335-371)||(28382671-28382707)
chr7 (335-371)||(29151676-29151712)
chr7 (335-371)||(31717390-31717426)
chr7 (335-371)||(34708765-34708801)
chr7 (335-371)||(35157083-35157119)
chr7 (335-371)||(35849388-35849424)
chr7 (335-371)||(40011988-40012024)
chr7 (335-371)||(43723405-43723441)
chr7 (335-371)||(44327733-44327769)
chr7 (335-371)||(45237023-45237059)
chr7 (335-371)||(48612610-48612646)
[»] chr4 (22 HSPs)
chr4 (335-371)||(29894503-29894539)
chr4 (336-369)||(54420161-54420194)
chr4 (335-371)||(5333205-5333241)
chr4 (335-371)||(6487939-6487975)
chr4 (335-371)||(7512860-7512896)
chr4 (335-371)||(12821256-12821292)
chr4 (335-371)||(13389113-13389149)
chr4 (335-371)||(16476936-16476972)
chr4 (335-371)||(18813463-18813499)
chr4 (335-371)||(21378379-21378415)
chr4 (335-371)||(25003825-25003861)
chr4 (335-371)||(29428148-29428184)
chr4 (335-371)||(30044583-30044619)
chr4 (335-371)||(31263500-31263536)
chr4 (335-371)||(33416579-33416615)
chr4 (335-371)||(36526140-36526176)
chr4 (335-371)||(36860848-36860884)
chr4 (335-371)||(37050794-37050830)
chr4 (335-371)||(37166231-37166267)
chr4 (335-371)||(42856656-42856692)
chr4 (335-371)||(46488116-46488152)
chr4 (335-371)||(49882708-49882744)
[»] chr3 (30 HSPs)
chr3 (335-371)||(2900348-2900384)
chr3 (335-371)||(1242310-1242346)
chr3 (335-371)||(2096582-2096618)
chr3 (335-371)||(2666305-2666341)
chr3 (335-371)||(3440819-3440855)
chr3 (335-371)||(3917859-3917895)
chr3 (335-371)||(4232176-4232212)
chr3 (335-371)||(5998781-5998817)
chr3 (335-371)||(8128289-8128325)
chr3 (335-371)||(8381172-8381208)
chr3 (335-371)||(8508025-8508061)
chr3 (335-371)||(9583422-9583458)
chr3 (335-371)||(10229050-10229086)
chr3 (335-371)||(11029757-11029793)
chr3 (335-371)||(13525262-13525298)
chr3 (335-371)||(15003721-15003757)
chr3 (335-371)||(19163727-19163763)
chr3 (335-371)||(24910287-24910323)
chr3 (335-371)||(28170978-28171014)
chr3 (335-371)||(29212062-29212098)
chr3 (335-371)||(32960977-32961013)
chr3 (335-371)||(34397773-34397809)
chr3 (335-371)||(38127841-38127877)
chr3 (335-371)||(38485958-38485994)
chr3 (335-371)||(41464759-41464795)
chr3 (335-371)||(46894906-46894942)
chr3 (335-371)||(47410751-47410787)
chr3 (335-371)||(48555929-48555965)
chr3 (335-371)||(51112465-51112501)
chr3 (335-371)||(54950127-54950163)
[»] chr2 (25 HSPs)
chr2 (335-371)||(11091585-11091621)
chr2 (335-371)||(42414598-42414634)
chr2 (335-371)||(4014812-4014848)
chr2 (335-371)||(6731635-6731671)
chr2 (335-371)||(7315760-7315796)
chr2 (335-371)||(7957985-7958021)
chr2 (335-371)||(11061475-11061511)
chr2 (335-371)||(11543798-11543834)
chr2 (335-371)||(15920613-15920649)
chr2 (335-371)||(20251484-20251520)
chr2 (335-371)||(24381338-24381374)
chr2 (335-371)||(33607136-33607172)
chr2 (335-371)||(34481670-34481706)
chr2 (335-371)||(34667137-34667173)
chr2 (335-371)||(35476489-35476525)
chr2 (335-371)||(36216752-36216788)
chr2 (335-371)||(36754740-36754776)
chr2 (335-371)||(36755041-36755077)
chr2 (335-371)||(36794897-36794933)
chr2 (337-369)||(37644234-37644266)
chr2 (335-371)||(40812110-40812146)
chr2 (335-371)||(43035533-43035569)
chr2 (335-371)||(44276356-44276392)
chr2 (335-371)||(44948112-44948148)
chr2 (335-371)||(45049478-45049514)
[»] scaffold0457 (1 HSPs)
scaffold0457 (335-367)||(6876-6908)
[»] scaffold0402 (1 HSPs)
scaffold0402 (335-371)||(1240-1276)
[»] scaffold0287 (1 HSPs)
scaffold0287 (335-371)||(1057-1093)


Alignment Details
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 29311984 - 29311868
Alignment:
Q  9 agtgagatgaaattgttaaaggaacattcaatcttcttcaatgaaaattaatatgcaaatcaaatcatataaaagtcaaagtaacaaatttcaaatttgg 108  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29311984 agtgaaatgaaattgttaaaggaacattcaatcttcttcaatgaaaattaatatgcaaatcaaatcatataaaagtcaaagtaacaaatttcaaatttgg 29311885  T
Q  109 ttcaaacaatggtaaat 125  Q
    || ||||||||||||||    
T  29311884 ttaaaacaatggtaaat 29311868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 29311865 - 29311782
Alignment:
Q  181 ttttaactagacgacaacctcc-ccctccttaattttaattaaccagacactaacccccctacttaaacatcaatacaataaac 263  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||    
T  29311865 ttttaactagacgacaaccttctccctccttaattttaattaaccagacactaactcccctacttaaatatcaatacgataaac 29311782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 24476370 - 24476294
Alignment:
Q  40 tcttcttcaatgaaaattaatatgcaaatcaaatcatataaaagtcaaagtaacaaatttcaaatttggttcaaacaa 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||| ||||||    
T  24476370 tcttcttcaatgaaaattaatatgcaaatcaaataatataaaagtcaaagtaacaaattt-taatttggttaaaacaa 24476294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 32572764 - 32572853
Alignment:
Q  15 atgaaattgttaaaggaacattcaatcttcttcaatgaaaa-ttaatatgcaaatcaaatcatataaaagtcaaagtaacaaatttcaaa 103  Q
    |||||||||||||||||| |||   |||||||||||||||| |||| ||||||||||||| |||||||| ||||||||||| ||||||||    
T  32572764 atgaaattgttaaaggaatatttgttcttcttcaatgaaaaattaagatgcaaatcaaataatataaaaatcaaagtaacacatttcaaa 32572853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 436
Target Start/End: Complemental strand, 29311626 - 29311563
Alignment:
Q  372 gcagaacatgtctttaagttccatctcacatattacaaccgcaaaaatagaagaaaatgttaccc 436  Q
    ||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| ||||||||    
T  29311626 gcagaacatgt-tttaagttccatcacacagattacaaccgcaaaaatagaagaaagtgttaccc 29311563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 29311753 - 29311716
Alignment:
Q  276 catcattaaagaccctaattgtctcttcaaccggagca 313  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  29311753 catcattaaagaccctaattgtctcttcaactggagca 29311716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 4165088 - 4165052
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  4165088 ggtagatagacgaaatggcaaagccattataaactca 4165052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 4874244 - 4874280
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  4874244 ggtagatagacgaaatggcaaagccattataaactca 4874280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 6219190 - 6219226
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  6219190 ggtagatagacgaaatggcaaagccattataaactca 6219226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 9640533 - 9640569
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  9640533 ggtagatagacgaaatggcaaagccattataaactca 9640569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 11968905 - 11968869
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  11968905 ggtagatagacgaaatggcaaagccattataaactca 11968869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 12878119 - 12878155
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  12878119 ggtagatagacgaaatggcaaagccattataaactca 12878155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 16371471 - 16371507
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  16371471 ggtagatagacgaaatggtaaagccattataaactca 16371507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 16496729 - 16496693
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  16496729 ggtagatagacgaaatggcaaagccattataaactca 16496693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 18625614 - 18625650
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  18625614 ggtagatagacgaaatggcaaagccattataaactca 18625650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 23074643 - 23074679
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  23074643 ggtagatagacgaaatggcaaagccattataaactca 23074679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 23311172 - 23311208
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  23311172 ggtagatagacgaaatggcaaagccattataaactca 23311208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 25328303 - 25328339
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  25328303 ggtagatagacgaaatggcaaagccattataaactca 25328339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 26266998 - 26267034
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  26266998 ggtagatagacgaaatggcaaagccattataaactca 26267034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 26802463 - 26802427
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  26802463 ggtagatagacgaaatggcaaagccattataaactca 26802427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 26810013 - 26809977
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  26810013 ggtagatagacgaaatggcaaagccattataaactca 26809977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 26825040 - 26825004
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  26825040 ggtagatagacgaaatggcaaagccattataaactca 26825004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 27389926 - 27389962
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  27389926 ggtagatagacgaaatggcaaagccattataaactca 27389962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 29119735 - 29119699
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  29119735 ggtagatagacgaaatggcaaagccattataaactca 29119699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 34856710 - 34856674
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  34856710 ggtagatagacgaaatggcaaagccattataaactca 34856674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 34930354 - 34930318
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  34930354 ggtagatagacgaaatggcaaagccattataaactca 34930318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 367
Target Start/End: Complemental strand, 36185266 - 36185234
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaa 367  Q
    |||||||||||||||||| ||||||||||||||    
T  36185266 ggtagatagacgaaatggcaaagctattataaa 36185234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 36569408 - 36569372
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  36569408 ggtagatagacgaaatggcaaagccattataaactca 36569372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 36790314 - 36790350
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  36790314 ggtagatagacgaaatggcaaagccattataaactca 36790350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 36854157 - 36854193
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  36854157 ggtagatagacgaaatggcaaagccattataaactca 36854193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 37191373 - 37191337
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  37191373 ggtagatagacgaaatggcaaagccattataaactca 37191337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 39528059 - 39528023
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  39528059 ggtagatagacgaaatggcaaagccattataaactca 39528023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 41071191 - 41071155
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  41071191 ggtagatagacgaaatggcaaagccattataaactca 41071155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 42448340 - 42448304
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  42448340 ggtagatagacgaaatggcaaagccattataaactca 42448304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 49318741 - 49318834
Alignment:
Q  15 atgaaattgttaaaggaacattcaatcttcttcaatgaaaattaatatgcaaatcaaatcatataaaagtcaaagt-aacaaatttcaaatttg 107  Q
    |||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  49318741 atgaaattgttaaaggaatatttgctcttcttcaatgaaaattaatatgcaaatcaaatcatataaaagtcaaagtaaacaaatttcaaatttg 49318834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 21522446 - 21522410
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||||||||| ||||||||||||    
T  21522446 ggtagatagacgaaatggaaaagcaattataaactca 21522410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 4923539 - 4923447
Alignment:
Q  122 aaatggcactaacctcccttgaggtctattaaaatgatgtcactcacatcccctctaatttttaactagacgacaacctccccctccttaattttaa 218  Q
    |||| |||| ||||||||||||||| | ||||||||   ||||||||| |||||| |||||||||| ||||   ||||| ||||| |||||||||||    
T  4923539 aaattgcacaaacctcccttgaggtttgttaaaatg---tcactcacaccccctcaaatttttaacaagacattaacct-cccctacttaattttaa 4923447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 371
Target Start/End: Original strand, 13980307 - 13980341
Alignment:
Q  337 tagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||| ||||||||||||||||||    
T  13980307 tagatagacgaaatggcaaagctattataaactca 13980341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 270322 - 270358
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  270322 ggtagatagacgaaatggcaaagccattataaactca 270358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 301045 - 301009
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  301045 ggtagatagacgaaatggcaaagccattataaactca 301009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 7599523 - 7599559
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||  ||||||||||||||||||    
T  7599523 ggtagatagacgaaatgacaaagctattataaactca 7599559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 18089768 - 18089804
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  18089768 ggtagatagacgaaatggcaaagccattataaactca 18089804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 19338177 - 19338213
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  19338177 ggtagatagacgaaatggcaaagccattataaactca 19338213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 20164072 - 20164108
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  20164072 ggtagatagacgaaatggcaaagccattataaactca 20164108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 25820949 - 25820985
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  25820949 ggtagatagacgaaatggcaaagccattataaactca 25820985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 33845603 - 33845639
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  33845603 ggtagatagacgaaatggcaaagccattataaactca 33845639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 33948375 - 33948339
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  33948375 ggtagatagacgaaatggcaaagccattataaactca 33948339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 35758404 - 35758368
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  35758404 ggtagatagacgaaatggtaaagccattataaactca 35758368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 39606534 - 39606498
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  39606534 ggtagatagacgaaatggcaaagccattataaactca 39606498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 40958573 - 40958609
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  40958573 ggtagatagacgaaatggcaaagccattataaactca 40958609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 43026020 - 43025984
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  43026020 ggtagatagacgaaatggcaaagccattataaactca 43025984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 43500142 - 43500178
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  43500142 ggtagatagacgaaatggcaaagccattataaactca 43500178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 43676023 - 43676059
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  43676023 ggtagatagacgaaatggcaaagccattataaactca 43676059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 48392085 - 48392049
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  48392085 ggtagatagacgaaatggcaaagccattataaactca 48392049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 49500990 - 49500954
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||  ||||||||||||||||||    
T  49500990 ggtagatagacgaaatgacaaagctattataaactca 49500954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 50248158 - 50248122
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  50248158 ggtagatagacgaaatggcaaagccattataaactca 50248122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 22231 - 22162
Alignment:
Q  48 aatgaaaattaatatgcaaatcaaatcatataaaagtcaaagtaacaaatttcaaatttggttcaaacaa 117  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||| ||||||    
T  22231 aatgaaaattaatatgcaaatcaaatcaaatcaaagtcaaagtaacaaattttaaatttggttaaaacaa 22162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 4662061 - 4661992
Alignment:
Q  48 aatgaaaattaatatgcaaatcaaatcatataaaagtcaaagtaacaaatttcaaatttggttcaaacaa 117  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||| ||||||    
T  4662061 aatgaaaattaatatgcaaatcaaatcaaatcaaagtcaaagtaacaaattttaaatttggttaaaacaa 4661992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 371
Target Start/End: Complemental strand, 4997000 - 4996965
Alignment:
Q  336 gtagatagacgaaatggaaaagctattataaactca 371  Q
    ||||||||||||||||| ||||||||||||||||||    
T  4997000 gtagatagacgaaatggcaaagctattataaactca 4996965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 371
Target Start/End: Original strand, 8116747 - 8116781
Alignment:
Q  337 tagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||| ||||||||||||||||||    
T  8116747 tagatagacgaaatggcaaagctattataaactca 8116781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 372
Target Start/End: Original strand, 32643723 - 32643760
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactcag 372  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  32643723 ggtagatagacgaaatggtaaagccattataaactcag 32643760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 735572 - 735536
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  735572 ggtagatagacgaaatggcaaagccattataaactca 735536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 1855135 - 1855099
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  1855135 ggtagatagacgaaatggcaaagccattataaactca 1855099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 4129074 - 4129038
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  4129074 ggtagatagacgaaatggcaaagccattataaactca 4129038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 4480603 - 4480567
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  4480603 ggtagatagacgaaatggcaaagccattataaactca 4480567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 7098935 - 7098899
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  7098935 ggtagatagacgaaatggcaaagccattataaactca 7098899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 8448141 - 8448177
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  8448141 ggtagatagacgaaatggcaaagccattataaactca 8448177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 8456945 - 8456981
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  8456945 ggtagatagacgaaatggcaaagccattataaactca 8456981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 10181174 - 10181138
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  10181174 ggtagatagacgaaatggcaaagccattataaactca 10181138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 10330934 - 10330898
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  10330934 ggtagatagacgaaatggcaaagccattataaactca 10330898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 12795018 - 12795054
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  12795018 ggtagatagacgaaatggcaaagccattataaactca 12795054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 18861766 - 18861802
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  18861766 ggtagatagacgaaatggcaaagccattataaactca 18861802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 31444291 - 31444327
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  31444291 ggtagatagacgaaatggcaaagccattataaactca 31444327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 32107834 - 32107870
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  32107834 ggtagatagacgaaatggcaaagccattataaactca 32107870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 39312 - 39348
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||||||||| ||||||||||||    
T  39312 ggtagatagacgaaatggaaaagccattataaactca 39348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 2733744 - 2733708
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||||||||||||||||    
T  2733744 ggtagatagacgaaatggcaaagctattataaactca 2733708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 371
Target Start/End: Complemental strand, 20993665 - 20993630
Alignment:
Q  336 gtagatagacgaaatggaaaagctattataaactca 371  Q
    ||||||||||||||||| ||||||||||||||||||    
T  20993665 gtagatagacgaaatggcaaagctattataaactca 20993630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 371
Target Start/End: Original strand, 34143355 - 34143389
Alignment:
Q  337 tagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||| ||||||||||||||||||    
T  34143355 tagatagacgaaatggcaaagctattataaactca 34143389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 2442889 - 2442853
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  2442889 ggtagatagacgaaatggcaaagccattataaactca 2442853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 4312262 - 4312226
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  4312262 ggtagatagacgaaatggcaaagccattataaactca 4312226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 4430734 - 4430770
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  4430734 ggtagatagacgaaatggcaaagccattataaactca 4430770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 4977033 - 4977069
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  4977033 ggtagatagacgaaatggcaaagccattataaactca 4977069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 6317429 - 6317393
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  6317429 ggtagatagacgaaatggcaaagccattataaactca 6317393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 6844984 - 6845020
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  6844984 ggtagatagacgaaatggcaaagccattataaactca 6845020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 10096741 - 10096705
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  10096741 ggtagatagacgaaatggcaaagccattataaactca 10096705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 14243828 - 14243792
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  14243828 ggtagatagacgaaatggcaaagccattataaactca 14243792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 16501776 - 16501740
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  16501776 ggtagatagacgaaatggcaaagccattataaactca 16501740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 18040265 - 18040229
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  18040265 ggtagatagacgaaatggtaaagccattataaactca 18040229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 20150350 - 20150314
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||  ||||||||||||||||||    
T  20150350 ggtagatagacgaaatgacaaagctattataaactca 20150314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 23681139 - 23681103
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  23681139 ggtagatagacgaaatggcaaagccattataaactca 23681103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 24655103 - 24655067
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  24655103 ggtagatagacgaaatggcaaagccattataaactca 24655067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 25063469 - 25063433
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  25063469 ggtagatagacgaaatggcaaagccattataaactca 25063433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 26675686 - 26675650
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  26675686 ggtagatagacgaaatggcaaagccattataaactca 26675650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 26690823 - 26690787
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  26690823 ggtagatagacgaaatggcaaagccattataaactca 26690787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 27544915 - 27544951
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  27544915 ggtagatagacgaaatggcaaagccattataaactca 27544951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 27817448 - 27817484
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  27817448 ggtagatagacgaaatggcaaagccattataaactca 27817484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 27849742 - 27849778
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  27849742 ggtagatagacgaaatggcaaagccattataaactca 27849778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 29514004 - 29513968
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  29514004 ggtagatagatgaaatggcaaagctattataaactca 29513968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 34540063 - 34540099
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  34540063 ggtagatagacgaaatggcaaagccattataaactca 34540099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 34711554 - 34711590
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  34711554 ggtagatagacgaaatggcaaagccattataaactca 34711590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 35421618 - 35421654
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  35421618 ggtagatagacgaaatggcaaagccattataaactca 35421654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 38953479 - 38953515
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  38953479 ggtagatagacgaaatggcaaagccattataaactca 38953515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 40772564 - 40772600
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  40772564 ggtagatagacgaaatggcaaagccattataaactca 40772600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 1582617 - 1582653
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||||||||||||||||    
T  1582617 ggtagatagacgaaatggcaaagctattataaactca 1582653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 1869945 - 1869909
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  1869945 ggtagatagacgaaatggcaaagccattataaactca 1869909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 2354794 - 2354830
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  2354794 ggtagatagacgaaatggcaaagccattataaactca 2354830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 3497516 - 3497552
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  3497516 ggtagatagacgaaatggcaaagccattataaactca 3497552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 3861335 - 3861371
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  3861335 ggtagatagacgaaatggcaaagccattataaactca 3861371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 4674308 - 4674344
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  4674308 ggtagatagacgaaatggcaaagccattataaactca 4674344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 4887512 - 4887548
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  4887512 ggtagatagacgaaatggcaaagccattataaactca 4887548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 12014731 - 12014767
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  12014731 ggtagatagacgaaatggcaaagccattataaactca 12014767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 16816820 - 16816784
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  16816820 ggtagatagacgaaatggcaaagccattataaactca 16816784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 23789414 - 23789450
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  23789414 ggtagatagacgaaatggcaaagccattataaactca 23789450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 28382707 - 28382671
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  28382707 ggtagatagacgaaatggcaaagccattataaactca 28382671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 29151712 - 29151676
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  29151712 ggtagatagacgaaatggtaaagccattataaactca 29151676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 31717426 - 31717390
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  31717426 ggtagatagacgaaatggcaaagccattataaactca 31717390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 34708801 - 34708765
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  34708801 ggtagatagacgaaatggcaaagccattataaactca 34708765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 35157083 - 35157119
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  35157083 ggtagatagacgaaatggcaaagccattataaactca 35157119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 35849424 - 35849388
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  35849424 ggtagatagacgaaatggcaaagccattataaactca 35849388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 40011988 - 40012024
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  40011988 ggtagatagacgaaatggcaaagccattataaactca 40012024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 43723441 - 43723405
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  43723441 ggtagatagacgaaatggcaaagccattataaactca 43723405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 44327769 - 44327733
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||  ||||||||||||||||||    
T  44327769 ggtagatagacgaaatgacaaagctattataaactca 44327733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 45237059 - 45237023
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  45237059 ggtagatagacgaaatggcaaagccattataaactca 45237023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 48612646 - 48612610
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  48612646 ggtagatagacgaaatggcaaagccattataaactca 48612610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 29894539 - 29894503
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||||||||||||||||    
T  29894539 ggtagatagacgaaatggcaaagctattataaactca 29894503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 369
Target Start/End: Original strand, 54420161 - 54420194
Alignment:
Q  336 gtagatagacgaaatggaaaagctattataaact 369  Q
    ||||||||||||||||| ||||||||||||||||    
T  54420161 gtagatagacgaaatggcaaagctattataaact 54420194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 5333205 - 5333241
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  5333205 ggtagatagacgaaatggcaaagccattataaactca 5333241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 6487975 - 6487939
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  6487975 ggtagatagacgaaatggcaaagccattataaactca 6487939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 7512896 - 7512860
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  7512896 ggtagatagacgaaatggcaaagccattataaactca 7512860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 12821292 - 12821256
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  12821292 ggtagatagacgaaatggcaaagccattataaactca 12821256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 13389149 - 13389113
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  13389149 ggtagatagacgaaatggcaaagccattataaactca 13389113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 16476936 - 16476972
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  16476936 ggtagatagacgaaatggcaaagccattataaactca 16476972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 18813499 - 18813463
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  18813499 ggtagatagacgaaatggcaaagccattataaactca 18813463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 21378415 - 21378379
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  21378415 ggtagatagacgaaatggcaaagccattataaactca 21378379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 25003861 - 25003825
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  25003861 ggtagatagacgaaatggcaaagccattataaactca 25003825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 29428184 - 29428148
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  29428184 ggtagatagacgaaatggcaaagccattataaactca 29428148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 30044583 - 30044619
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  30044583 ggtagatagacgaaatggcaaagccattataaactca 30044619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 31263500 - 31263536
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  31263500 ggtagatagacgaaatggcaaagccattataaactca 31263536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 33416579 - 33416615
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  33416579 ggtagatagacgaaatggcaaagccattataaactca 33416615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 36526140 - 36526176
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  36526140 ggtagatagacgaaatggcaaagccattataaactca 36526176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 36860848 - 36860884
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  36860848 ggtagatagacgaaatggcaaagccattataaactca 36860884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 37050830 - 37050794
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  37050830 ggtagatagacgaaatggcaaagccattataaactca 37050794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 37166267 - 37166231
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  37166267 ggtagatagacgaaatggcaaagccattataaactca 37166231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 42856692 - 42856656
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  42856692 ggtagatagacgaaatggcaaagccattataaactca 42856656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 46488116 - 46488152
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  46488116 ggtagatagacgaaatggcaaagccattataaactca 46488152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 49882708 - 49882744
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  49882708 ggtagatagacgaaatggcaaagccattataaactca 49882744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 2900384 - 2900348
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||||||||||||||||    
T  2900384 ggtagatagacgaaatggcaaagctattataaactca 2900348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 1242346 - 1242310
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  1242346 ggtagatagacgaaatggcaaagccattataaactca 1242310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 2096582 - 2096618
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  2096582 ggtagatagacgaaatggcaaagccattataaactca 2096618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 2666341 - 2666305
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  2666341 ggtagatagacgaaatggcaaagccattataaactca 2666305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 3440855 - 3440819
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  3440855 ggtagatagacgaaatggcaaagccattataaactca 3440819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 3917895 - 3917859
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  3917895 ggtagatagacgaaatggcaaagccattataaactca 3917859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 4232176 - 4232212
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  4232176 ggtagatagacgaaatggcaaagccattataaactca 4232212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 5998781 - 5998817
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  5998781 ggtagatagacgaaatggcaaagccattataaactca 5998817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 8128289 - 8128325
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  8128289 ggtagatagacgaaatggcaaagccattataaactca 8128325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 8381208 - 8381172
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  8381208 ggtagatagacgaaatggcaaagccattataaactca 8381172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 8508061 - 8508025
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  8508061 ggtagatagacgaaatggcaaagccattataaactca 8508025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 9583422 - 9583458
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  9583422 ggtagatagacgaaatggcaaagccattataaactca 9583458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 10229086 - 10229050
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  10229086 ggtagatagacgaaatggcaaagccattataaactca 10229050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 11029793 - 11029757
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  11029793 ggtagatagacgaaatggcaaagccattataaactca 11029757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 13525298 - 13525262
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  13525298 ggtagatagacgaaatggcaaagccattataaactca 13525262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 15003757 - 15003721
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  15003757 ggtagatagacgaaatggcaaagccattataaactca 15003721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 19163763 - 19163727
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  19163763 ggtagatagacgaaatggcaaagccattataaactca 19163727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 24910287 - 24910323
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  24910287 ggtagatagacgaaatggcaaagccattataaactca 24910323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 28170978 - 28171014
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  28170978 ggtagatagacgaaatggcaaagccattataaactca 28171014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 29212062 - 29212098
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  29212062 ggtagatagacgaaatggcaaagccattataaactca 29212098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 32960977 - 32961013
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  32960977 ggtagatagacgaaatggcaaagccattataaactca 32961013  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 34397809 - 34397773
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  34397809 ggtagatagacgaaatggcaaagccattataaactca 34397773  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 38127841 - 38127877
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  38127841 ggtagatagacgaaatggcaaagccattataaactca 38127877  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 38485958 - 38485994
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  38485958 ggtagatagacgaaatggcaaagccattataaactca 38485994  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 41464795 - 41464759
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  41464795 ggtagatagacgaaatggcaaagccattataaactca 41464759  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 46894942 - 46894906
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||||||||| | ||||||||||    
T  46894942 ggtagatagacgaaatggaaaagccaatataaactca 46894906  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 47410751 - 47410787
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  47410751 ggtagatagacgaaatggcaaagccattataaactca 47410787  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 48555965 - 48555929
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  48555965 ggtagatagacgaaatggcaaagccattataaactca 48555929  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 51112465 - 51112501
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  51112465 ggtagatagacgaaatggcaaagccattataaactca 51112501  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 54950163 - 54950127
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||  ||||||||||||||||||    
T  54950163 ggtagatagacgaaatgacaaagctattataaactca 54950127  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 11091585 - 11091621
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||||||||||||||||    
T  11091585 ggtagatagacgaaatggcaaagctattataaactca 11091621  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 42414634 - 42414598
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||||||||||||||||    
T  42414634 ggtagatagacgaaatggcaaagctattataaactca 42414598  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 4014812 - 4014848
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  4014812 ggtagatagacgaaatggcaaagccattataaactca 4014848  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 6731671 - 6731635
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  6731671 ggtagatagacgaaatggcaaagccattataaactca 6731635  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 7315760 - 7315796
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  7315760 ggtagatagatgaaatggtaaagctattataaactca 7315796  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 7957985 - 7958021
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||  ||||||||||||||||||    
T  7957985 ggtagatagacgaaatgacaaagctattataaactca 7958021  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 11061511 - 11061475
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  11061511 ggtagatagacgaaatggcaaagccattataaactca 11061475  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 11543798 - 11543834
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  11543798 ggtagatagacgaaatggcaaagccattataaactca 11543834  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 15920613 - 15920649
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  15920613 ggtagatagacgaaatggcaaagccattataaactca 15920649  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 20251484 - 20251520
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  20251484 ggtagatagacgaaatggcaaagccattataaactca 20251520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 24381374 - 24381338
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  24381374 ggtagatagacgaaatggcaaagccattataaactca 24381338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 33607172 - 33607136
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  33607172 ggtagatagacgaaatggcaaagccattataaactca 33607136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 34481670 - 34481706
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  34481670 ggtagatagacgaaatggcaaagccattataaactca 34481706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 34667173 - 34667137
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  34667173 ggtagatagacgaaatggcaaagccattataaactca 34667137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 35476489 - 35476525
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  35476489 ggtagatagacgaaatggcaaagccattataaactca 35476525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 36216752 - 36216788
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  36216752 ggtagatagacgaaatggcaaagccattataaactca 36216788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 36754740 - 36754776
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  36754740 ggtagatagacgaaatggcaaagccattataaactca 36754776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 36755077 - 36755041
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  36755077 ggtagatagacgaaatggcaaagccattataaactca 36755041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 36794933 - 36794897
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  36794933 ggtagatagacgaaatggcaaagccattataaactca 36794897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 37644234 - 37644266
Alignment:
Q  337 tagatagacgaaatggaaaagctattataaact 369  Q
    |||||||||||||||| ||||||||||||||||    
T  37644234 tagatagacgaaatggcaaagctattataaact 37644266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 40812146 - 40812110
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  40812146 ggtagatagacgaaatggcaaagccattataaactca 40812110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 43035569 - 43035533
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  43035569 ggtagatagacgaaatggtaaagccattataaactca 43035533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 44276392 - 44276356
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  44276392 ggtagatagacgaaatggcaaagccattataaactca 44276356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 44948148 - 44948112
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  44948148 ggtagatagacgaaatggcaaagccattataaactca 44948112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 45049514 - 45049478
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  45049514 ggtagatagacgaaatggcaaagccattataaactca 45049478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0457 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 367
Target Start/End: Complemental strand, 6908 - 6876
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaa 367  Q
    |||||||||||||||||| ||||||||||||||    
T  6908 ggtagatagacgaaatggtaaagctattataaa 6876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 1240 - 1276
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  1240 ggtagatagacgaaatggcaaagccattataaactca 1276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 1057 - 1093
Alignment:
Q  335 ggtagatagacgaaatggaaaagctattataaactca 371  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  1057 ggtagatagacgaaatggcaaagccattataaactca 1093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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