View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8283_high_9 (Length: 315)
Name: NF8283_high_9
Description: NF8283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8283_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 34675898 - 34675579
Alignment:
| Q |
1 |
tttgttgggtatgtctttgtttctaattataatatgttggtggttatggttaaacggattgagctagcttacattggtttctttatccttcatgggtcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34675898 |
tttgttgggtatgtctttgtttctaattataatatgtttgtggttatggttaaacggattgagctagcttacattggtttctttatccttcatgggtcca |
34675799 |
T |
|
| Q |
101 |
ctattattggagtggtccnnnnnnntttaatgttttttactccaccttattgtaacacaaaaacttcaatggaaaacattatactaagcaa--------- |
191 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34675798 |
ctattattggagtggtccaaaaaaagttaatgctttttactccaccttattgtaacacaaaaacttcaatggaaaacattatactaagcaatgtattttt |
34675699 |
T |
|
| Q |
192 |
--------tgtattctcttaatgcattgatttatttattttatttaaatttcagttcagtcgttgcaacttacaaacccataatgatttgattacattta |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34675698 |
gcatgctgtgtattctcttaatgcattgatttatttattttatttaaatttcagttcagtcgttgcaacttacaaacccataatgatttgattacattta |
34675599 |
T |
|
| Q |
284 |
tttattttatcgaaatttca |
303 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
34675598 |
tttattttatcgaaatttca |
34675579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University