View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8283_low_11 (Length: 344)

Name: NF8283_low_11
Description: NF8283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8283_low_11
NF8283_low_11
[»] chr7 (6 HSPs)
chr7 (18-302)||(22931764-22932048)
chr7 (104-219)||(26241594-26241709)
chr7 (64-147)||(33194691-33194774)
chr7 (62-147)||(37928267-37928352)
chr7 (90-150)||(21857658-21857717)
chr7 (93-147)||(21946153-21946207)
[»] chr1 (9 HSPs)
chr1 (90-219)||(49731151-49731280)
chr1 (117-221)||(18786436-18786540)
chr1 (104-147)||(33148908-33148951)
chr1 (92-210)||(36160565-36160681)
chr1 (108-219)||(39238844-39238955)
chr1 (62-152)||(48887761-48887851)
chr1 (94-174)||(15398283-15398360)
chr1 (106-238)||(26829503-26829636)
chr1 (92-128)||(36013063-36013099)
[»] chr3 (10 HSPs)
chr3 (65-234)||(1711897-1712067)
chr3 (109-238)||(20406582-20406711)
chr3 (108-157)||(31069611-31069660)
chr3 (65-142)||(46647454-46647530)
chr3 (93-147)||(40843060-40843114)
chr3 (95-164)||(37043030-37043099)
chr3 (92-208)||(45054384-45054500)
chr3 (108-143)||(2379669-2379704)
chr3 (64-174)||(37822676-37822786)
chr3 (62-122)||(4195416-4195476)
[»] chr5 (4 HSPs)
chr5 (92-213)||(1447549-1447670)
chr5 (92-221)||(26401994-26402123)
chr5 (180-238)||(35626673-35626732)
chr5 (93-147)||(14152533-14152587)
[»] chr6 (6 HSPs)
chr6 (104-220)||(12677829-12677945)
chr6 (92-213)||(2911462-2911583)
chr6 (65-174)||(30929465-30929575)
chr6 (90-147)||(10008188-10008245)
chr6 (65-208)||(5611129-5611272)
chr6 (199-238)||(2470455-2470495)
[»] chr4 (6 HSPs)
chr4 (65-197)||(52370376-52370508)
chr4 (98-206)||(36752655-36752762)
chr4 (68-146)||(34341395-34341473)
chr4 (65-146)||(35808568-35808648)
chr4 (199-238)||(27133653-27133693)
chr4 (91-147)||(37461827-37461882)
[»] chr8 (10 HSPs)
chr8 (86-190)||(44655252-44655356)
chr8 (92-219)||(12981554-12981685)
chr8 (63-238)||(3137368-3137544)
chr8 (98-142)||(13461983-13462027)
chr8 (108-146)||(3670555-3670593)
chr8 (62-238)||(11150890-11151066)
chr8 (180-221)||(24334531-24334572)
chr8 (93-142)||(32881111-32881160)
chr8 (67-147)||(547034-547114)
chr8 (65-101)||(31330970-31331006)
[»] chr2 (6 HSPs)
chr2 (90-213)||(33609169-33609292)
chr2 (68-170)||(5525323-5525424)
chr2 (114-212)||(604755-604853)
chr2 (65-221)||(4652023-4652179)
chr2 (95-147)||(27896463-27896515)
chr2 (92-210)||(9021470-9021588)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 22932048 - 22931764
Alignment:
18 ctagggaactaaagtctcgaacacccccaaaataatgatgcttctatggagaatgctaaccagtgttctaatgacattggttaaataactaaaataagta 117  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||  | ||| ||||||||||||| ||| ||||||||||    
22932048 ctagggaactaaagtctcgaacacctccaaaataatgatgcttctatggagaatgctaacaagtactttaaggacattggttaaacaaccaaaataagta 22931949  T
118 agtttttaataaaaagtagtgtaattattaattgggcaattgtaacagcttacatttctgatacaaaatttctacttatgaattccttaaccattgtcct 217  Q
    | |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
22931948 aattttcaataaaaagtagtgtaattattaattgggcaattgtaacaacttacatttctgagacaaaatttctacttatgaattccttaaccattgtcct 22931849  T
218 tagggtacggttagcaagaccttttatctagcatattgtttacttaaaacttagcaatattaatttggaatacataaccgcgaca 302  Q
    |||| |||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
22931848 taggatacggttaacaagaccctttatctagcatactgtttacttaaaacttagcaatattaatttggaatacataaccgcgaca 22931764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 26241709 - 26241594
Alignment:
104 aactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaacagcttacatttctgatacaaaatttctacttatgaattcc 203  Q
    |||||||| |||||| |||||||||||||||||| ||||||||| |||  ||| |||||||  |||| ||||  | |||||| |||||||| || ||| |    
26241709 aactaaaacaagtaactttttaataaaaagtagtataattattatttgatcaaatgtaacatattacgtttccaaaacaaaacttctacttttggatttc 26241610  T
204 ttaaccattgtcctta 219  Q
    |||||||||| |||||    
26241609 ttaaccattgccctta 26241594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 33194691 - 33194774
Alignment:
64 tggagaatgctaaccagtgttctaatgacattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattatta 147  Q
    |||||||||||||||| ||| |  | || |||||||||  ||||||||||||||| ||||||||||||||||||||||| ||||    
33194691 tggagaatgctaaccattgtccccaagatattggttaagcaactaaaataagtaaatttttaataaaaagtagtgtaatcatta 33194774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 37928267 - 37928352
Alignment:
62 tatggagaatgctaaccagtgttctaatgacattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattatta 147  Q
    |||||| ||||||||| |||||   || ||||||||||||| | | ||||||||||||||||||  ||||||| ||||||| ||||    
37928267 tatggaaaatgctaactagtgtctcaaggacattggttaaacatccaaaataagtaagtttttataaaaaagttgtgtaataatta 37928352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 21857717 - 21857658
Alignment:
90 gacattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaatt 150  Q
    |||||| ||||| |||| ||||||||||| |||||| ||||| ||||||||||||||||||    
21857717 gacattagttaagtaacaaaaataagtaactttttattaaaa-gtagtgtaattattaatt 21857658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 21946153 - 21946207
Alignment:
93 attggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattatta 147  Q
    ||||||||||  |||||||||||||| |||  |||||||||| ||||||||||||    
21946153 attggttaaaatactaaaataagtaactttgcaataaaaagttgtgtaattatta 21946207  T

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Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 49731280 - 49731151
Alignment:
90 gacattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaacagcttacatttctgatacaaaatttc 189  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |||| ||| ||||||| ||||||| |   | |||||| |||    
49731280 gacattggttaaacaactaaaacaagtaagtttttaataaaaagtagtataattattatttggtcaaatgtaacatcttacatcttcaagacaaaacttc 49731181  T
190 tacttatgaattccttaaccattgtcctta 219  Q
    ||||| || |||||||||||||||||||||    
49731180 tacttttggattccttaaccattgtcctta 49731151  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 221
Target Start/End: Complemental strand, 18786540 - 18786436
Alignment:
117 aagtttttaataaaaagtagtgtaattattaattgggcaattgtaacagcttacatttctgatacaaaatttctacttatgaattccttaaccattgtcc 216  Q
    ||||||||||||||||  ||||||||||||| |||| |||||| || || ||| |||||  | |||||| || |||||||  ||||||||||||||||||    
18786540 aagtttttaataaaaaacagtgtaattattacttggtcaattgcaatagtttatatttccaagacaaaagttttacttatagattccttaaccattgtcc 18786441  T
217 ttagg 221  Q
    |||||    
18786440 ttagg 18786436  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 33148908 - 33148951
Alignment:
104 aactaaaataagtaagtttttaataaaaagtagtgtaattatta 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
33148908 aactaaaataagtaagtttttaataaaaagtagtgtaattatta 33148951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 36160565 - 36160681
Alignment:
92 cattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaacagcttacatttctgatacaaaatttcta 191  Q
    ||||||||||  || ||||| ||||||||| ||||||||||||||||||||||||| || | ||| ||||  |||||| |||||| | |||||| |||||    
36160565 cattggttaagcaattaaaacaagtaagttcttaataaaaagtagtgtaattattactttgtcaaatgta--agcttatatttctaagacaaaacttcta 36160662  T
192 cttatgaattccttaacca 210  Q
     ||||| |||| |||||||    
36160663 tttatggattctttaacca 36160681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 108 - 219
Target Start/End: Original strand, 39238844 - 39238955
Alignment:
108 aaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaacagcttacatttctgatacaaaatttctacttatgaattccttaa 207  Q
    |||| |||||||||||||||||||| ||||||||| |||| |||  ||| ||||||| ||||||||| | | | ||||||| || ||||| |||||||||    
39238844 aaaacaagtaagtttttaataaaaaatagtgtaatcattacttgatcaaatgtaacaacttacatttttaagagaaaatttttatttatggattccttaa 39238943  T
208 ccattgtcctta 219  Q
    ||| || |||||    
39238944 ccaatgccctta 39238955  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 48887761 - 48887851
Alignment:
62 tatggagaatgctaaccagtgttctaatgacattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaattgg 152  Q
    |||||||||||||||||||||| ||   | ||||||||||  |||||||| ||||||||||||||| ||||||| || ||| |||| ||||    
48887761 tatggagaatgctaaccagtgtcctggaggcattggttaagcaactaaaacaagtaagtttttaatgaaaagtaatgcaatcattatttgg 48887851  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 15398360 - 15398283
Alignment:
94 ttggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaacagcttacattt 174  Q
    |||||||| ||| ||||| || |||||||||||| |||||||||   ||||||| |||| ||| ||||||| |||||||||    
15398360 ttggttaagtaattaaaacaaataagtttttaattaaaagtagt---attattacttggtcaaatgtaacatcttacattt 15398283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 238
Target Start/End: Original strand, 26829503 - 26829636
Alignment:
106 ctaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaacagcttacatttctgatacaaaatttctacttatgaattcctt 205  Q
    ||||||||||||| |||| |  ||||||| ||||||| |||| ||   |||  |||||| |||| |||||  | |||||||||||| || | |||| |||    
26829503 ctaaaataagtaaattttcatgaaaaagttgtgtaatcattactttatcaaaagtaacatcttatatttccaagacaaaatttctaattgtaaatttctt 26829602  T
206 aaccattgtccttagggtac-ggttagcaagacc 238  Q
    |||||||| |||||||| ||  ||||||||||||    
26829603 aaccattgcccttagggcacttgttagcaagacc 26829636  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 36013063 - 36013099
Alignment:
92 cattggttaaataactaaaataagtaagtttttaata 128  Q
    |||||||||||||||||||| |||||| |||||||||    
36013063 cattggttaaataactaaaacaagtaactttttaata 36013099  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 234
Target Start/End: Complemental strand, 1712067 - 1711897
Alignment:
65 ggagaatgctaaccagtgttctaatgacattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaaca 164  Q
    ||||||||||||||||||| |||| |  |||||||||| ||||||||||||||| ||||||||||||| |||| ||||||||| || | ||| |||||||    
1712067 ggagaatgctaaccagtgtactaagggtattggttaaacaactaaaataagtaaatttttaataaaaaatagtataattattacttagtcaaatgtaaca 1711968  T
165 gcttacatttctgatacaaaatttctacttatgaattccttaaccattgtccttagggtac-ggttagcaa 234  Q
     |||| ||||   | ||||||||| || || |  ||||||||||||||||| |||| |||| |||||||||    
1711967 tcttatattttcaagacaaaatttataattttagattccttaaccattgtctttagagtactggttagcaa 1711897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 238
Target Start/End: Original strand, 20406582 - 20406711
Alignment:
109 aaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaacagcttacatttctgatacaaaatttctacttatgaattccttaac 208  Q
    ||||||||||||||||||||||||||  ||| || |||| |||| ||| |||| |||||| ||||||  | | |||| ||||||||||| |||||||||     
20406582 aaataagtaagtttttaataaaaagttatgt-atcattacttggtcaaatgtagcagcttgcatttccaagataaaacttctacttatggattccttaat 20406680  T
209 cattgtccttagggtac-ggttagcaagacc 238  Q
    |||||  ||||||| || | |||||||||||    
20406681 cattgctcttagggcactgattagcaagacc 20406711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 31069660 - 31069611
Alignment:
108 aaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaat 157  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| ||||    
31069660 aaaataagtacgtttttaataaaaagtagtgtaattattacttggtcaat 31069611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 46647454 - 46647530
Alignment:
65 ggagaatgctaaccagtgttctaatgacattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaat 142  Q
    ||||||||||||||||||    || ||||||||||||  ||||| || ||||||||||||||||||||||||||||||    
46647454 ggagaatgctaaccagtgcctcaaggacattggttaag-aactataacaagtaagtttttaataaaaagtagtgtaat 46647530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 40843060 - 40843114
Alignment:
93 attggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattatta 147  Q
    |||||||||| ||||||||||| ||| |||||||||||||||| | |||||||||    
40843060 attggttaaacaactaaaataaataaatttttaataaaaagtaatataattatta 40843114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 37043099 - 37043030
Alignment:
95 tggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaaca 164  Q
    |||||||| |||||||  ||||||||||||||||||||||||| |||| |||| |||  ||| |||||||    
37043099 tggttaaacaactaaatcaagtaagtttttaataaaaagtagtataatcattacttgatcaaatgtaaca 37043030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 45054384 - 45054500
Alignment:
92 cattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaacagcttacatttctgatacaaaatttcta 191  Q
    ||||||||||| |  ||||| ||||||| ||||| |||||| ||||||||| |||| || | |||  ||||||| ||| |||||| | ||||  ||||||    
45054384 cattggttaaacagttaaaagaagtaagattttattaaaaaatagtgtaataattagttagtcaaaagtaacagtttatatttctaacacaatttttcta 45054483  T
192 cttatgaattccttaac 208  Q
    ||| |||||| ||||||    
45054484 cttttgaatttcttaac 45054500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 2379704 - 2379669
Alignment:
108 aaaataagtaagtttttaataaaaagtagtgtaatt 143  Q
    |||||||||||||||||| |||||||||||||||||    
2379704 aaaataagtaagtttttattaaaaagtagtgtaatt 2379669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 174
Target Start/End: Original strand, 37822676 - 37822786
Alignment:
64 tggagaatgctaaccagtgttctaatgacattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaac 163  Q
    |||||||||||||| | ||  |||  ||||||||||||| || ||||| | |||||||||||||||||| |||| | || ||||  ||  ||| ||||||    
37822676 tggagaatgctaactaatgcgctatagacattggttaaacaattaaaacatgtaagtttttaataaaaactagtattatcattacctgatcaaatgtaac 37822775  T
164 agcttacattt 174  Q
    | |||||||||    
37822776 atcttacattt 37822786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 4195476 - 4195416
Alignment:
62 tatggagaatgctaaccagtgttctaatgacattggttaaataactaaaataagtaagttt 122  Q
    |||||||||||||||||| || |||   | |||||||||||  ||||||||||||||||||    
4195476 tatggagaatgctaaccattgctcttggggcattggttaaagtactaaaataagtaagttt 4195416  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 1447670 - 1447549
Alignment:
92 cattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaacagcttacatttctgatacaaaatttcta 191  Q
    ||||||||||  ||| |||||||||||||||||||| ||||||||||||||||||| |||| ||| |||||||||||| |||||  | | ||||||||||    
1447670 cattggttaagcaacaaaaataagtaagtttttaatgaaaagtagtgtaattattacttggtcaactgtaacagcttatatttccaaaataaaatttcta 1447571  T
192 cttatgaattccttaaccattg 213  Q
    |||||| ||| ||||| |||||    
1447570 cttatggatttcttaatcattg 1447549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 221
Target Start/End: Complemental strand, 26402123 - 26401994
Alignment:
92 cattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaacagcttacatttctgatacaaaatttcta 191  Q
    ||||||||| |  |||||||||||||| |||| |||||||||| ||||||| |||  |  | |||  || | ||||| ||||||  ||||||||||||||    
26402123 cattggttagagtactaaaataagtaatttttcaataaaaagttgtgtaatcattgttaagacaaaagtgaaagcttgcatttccaatacaaaatttcta 26402024  T
192 cttatgaattccttaaccattgtccttagg 221  Q
    || ||| |||||||||||||||| ||||||    
26402023 ctaatggattccttaaccattgttcttagg 26401994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 35626673 - 35626732
Alignment:
180 acaaaatttctacttatgaattccttaaccattgtccttagggtac-ggttagcaagacc 238  Q
    |||||||||||| | ||| |||||||||||||||||||||||| ||  ||||||||||||    
35626673 acaaaatttctattaatggattccttaaccattgtccttagggcactagttagcaagacc 35626732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 14152587 - 14152533
Alignment:
93 attggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattatta 147  Q
    ||||||||| |||| |||| |||||| ||||| ||||||||| ||||||||||||    
14152587 attggttaagtaaccaaaacaagtaacttttttataaaaagtggtgtaattatta 14152533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 104 - 220
Target Start/End: Original strand, 12677829 - 12677945
Alignment:
104 aactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaacagcttacatttctgatacaaaatttctacttatgaattcc 203  Q
    |||||||| |||||||||||||||||||||||||||||| |||| |||| ||| |||||  ||| |||||||| | | |||||||||||||||| ||| |    
12677829 aactaaaacaagtaagtttttaataaaaagtagtgtaatcattacttggtcaaatgtaatcgctcacatttctaagagaaaatttctacttatggatttc 12677928  T
204 ttaaccattgtccttag 220  Q
    ||||||| |||||||||    
12677929 ttaaccaatgtccttag 12677945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 2911583 - 2911462
Alignment:
92 cattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaacagcttacatttctgatacaaaatttcta 191  Q
    ||||||||||  || ||||| || ||||||||||| |||||||||| |||| |||| |||  ||| ||||||| |||||||||   | |||||| |||||    
2911583 cattggttaagcaattaaaacaaataagtttttaaaaaaaagtagtataatcattacttgatcaaatgtaacatcttacattttcaagacaaaacttcta 2911484  T
192 cttatgaattccttaaccattg 213  Q
    ||| | ||||| ||||||||||    
2911483 cttttaaattctttaaccattg 2911462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 30929465 - 30929575
Alignment:
65 ggagaatgctaaccagtgttctaatgacattggttaaataactaaaataagtaagtttt-taataaaaagtagtgtaattattaattgggcaattgtaac 163  Q
    ||||||||||||| |||| || || | ||||||||||   ||||||| |||||| |||| |||||||||||||| ||||||||| |||  ||| ||||||    
30929465 ggagaatgctaactagtgctccaagggcattggttaagcgactaaaacaagtaaattttttaataaaaagtagtataattattatttgatcaaatgtaac 30929564  T
164 agcttacattt 174  Q
    | |||| ||||    
30929565 atcttaaattt 30929575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 10008188 - 10008245
Alignment:
90 gacattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattatta 147  Q
    ||||||||||||  ||| |||| ||||||||||||| |||||||| ||||||||||||    
10008188 gacattggttaagcaaccaaaagaagtaagtttttattaaaaagtggtgtaattatta 10008245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 5611272 - 5611129
Alignment:
65 ggagaatgctaaccagtgttctaatgacattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaaca 164  Q
    ||||||||||||||||| |  ||| |  |||||||||| | | |||| |||||||||||||  || |||| || ||||||||| |||   ||  ||||||    
5611272 ggagaatgctaaccagtatcataaaggtattggttaaacatccaaaacaagtaagtttttatgaataagttgtataattattatttgattaaaagtaaca 5611173  T
165 gcttacatttctgatacaaaatttctacttatgaattccttaac 208  Q
     |||| |||||| | |||||||||||| ||||  ||||||||||    
5611172 tcttatatttctaagacaaaatttctatttatagattccttaac 5611129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 2470455 - 2470495
Alignment:
199 attccttaaccattgtccttagggtac-ggttagcaagacc 238  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
2470455 attccttaaccattgtcctgagggtactggttagcaagacc 2470495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 65 - 197
Target Start/End: Complemental strand, 52370508 - 52370376
Alignment:
65 ggagaatgctaaccagtgttctaatgacattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaaca 164  Q
    |||||||| |||||| || | ||| || |||||||||  || |||||||| ||||||||||||||| |||||||||||||||| |||| |||||||||||    
52370508 ggagaatgttaaccactgatataaggatattggttaagcaattaaaataaataagtttttaataaatagtagtgtaattattacttggtcaattgtaaca 52370409  T
165 gcttacatttctgatacaaaatttctacttatg 197  Q
    |||||||||||  | ||||||||| || |||||    
52370408 gcttacatttccaaaacaaaatttttatttatg 52370376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 98 - 206
Target Start/End: Complemental strand, 36752762 - 36752655
Alignment:
98 ttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaacagcttacatttctgatacaaaatttctacttatg 197  Q
    ||||| |||||||| |||||| ||||||||||||| | |||||||||||| |||| ||| || |||||||||||||||  | | |||| |||||||||||    
36752762 ttaaacaactaaaacaagtaaatttttaataaaaaattgtgtaattattacttggtcaaatggaacagcttacatttccaaca-aaaacttctacttatg 36752664  T
198 aattcctta 206  Q
    |||||||||    
36752663 aattcctta 36752655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 34341395 - 34341473
Alignment:
68 gaatgctaaccagtgttctaatgacattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattatt 146  Q
    |||||||||| ||||||||   |||||||||||||   || ||||| |||||||| || |||||||| |||||||||||    
34341395 gaatgctaacgagtgttcttgagacattggttaaagttctcaaatatgtaagtttgtattaaaaagttgtgtaattatt 34341473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 35808648 - 35808568
Alignment:
65 ggagaatgctaaccagtgttctaatgacattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattatt 146  Q
    |||||||| ||| |||||| || | | ||||||||||  ||| ||||||||||| ||||| ||||||||| |||||||||||    
35808648 ggagaatgttaaacagtgtcctcaagtcattggttaagcaaccaaaataagtaacttttt-ataaaaagttgtgtaattatt 35808568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 27133653 - 27133693
Alignment:
199 attccttaaccattgtccttagggtac-ggttagcaagacc 238  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
27133653 attccttaaccattgtcctgagggtactggttagcaagacc 27133693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 37461882 - 37461827
Alignment:
91 acattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattatta 147  Q
    |||||||||||  || |||||||||||| |||||| |||||||| ||||||||||||    
37461882 acattggttaagcaattaaaataagtaacttttta-taaaaagtggtgtaattatta 37461827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 86 - 190
Target Start/End: Complemental strand, 44655356 - 44655252
Alignment:
86 taatgacattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaacagcttacatttctgatacaaaa 185  Q
    ||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||| ||||  ||||  | ||||||    
44655356 taatgacattgattaaacaaccaaaataaataagtttttaataaaaagtagtgtaattattacttggtcaattgtaacaacttatttttccaagacaaaa 44655257  T
186 tttct 190  Q
    |||||    
44655256 tttct 44655252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 12981554 - 12981685
Alignment:
92 cattggttaaataactaaaataagtaagtttttaataaaaagta----gtgtaattattaattgggcaattgtaacagcttacatttctgatacaaaatt 187  Q
    ||||||||||  | ||||||||||||||||||||||||||||||    || |||| |||| |||| ||| ||||||| |||||||||   | ||||||||    
12981554 cattggttaagcacctaaaataagtaagtttttaataaaaagtactccgtataatcattacttggtcaaatgtaacatcttacattttcaagacaaaatt 12981653  T
188 tctacttatgaattccttaaccattgtcctta 219  Q
    |||| || ||||||||||||||||||||||||    
12981654 tctaattttgaattccttaaccattgtcctta 12981685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 238
Target Start/End: Original strand, 3137368 - 3137544
Alignment:
63 atggagaatgctaaccagtgttctaatgacattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaa 162  Q
    ||||||||||||||||||||  ||||  ||||||||||   | | |||| || ||||||| ||  ||||||| ||||||| |||| |||  |||  ||||    
3137368 atggagaatgctaaccagtgccctaagaacattggttaggcatccaaaacaaataagtttatatgaaaaagttgtgtaataattacttgatcaaaagtaa 3137467  T
163 cagcttacatttctgatacaaaatttctacttatgaattccttaaccattgtccttagggtac-ggttagcaagacc 238  Q
    || |||||||||   | |||||||||||| || |||||| ||||||||||| ||| |||| || |||||||||||||    
3137468 catcttacattttcaagacaaaatttctatttctgaatttcttaaccattgccctgagggcactggttagcaagacc 3137544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 13462027 - 13461983
Alignment:
98 ttaaataactaaaataagtaagtttttaataaaaagtagtgtaat 142  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||    
13462027 ttaaatatctaaaataagtaagtttttaataaaaagttgtgtaat 13461983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 3670555 - 3670593
Alignment:
108 aaaataagtaagtttttaataaaaagtagtgtaattatt 146  Q
    |||||||||||||||||| |||||||| |||||||||||    
3670555 aaaataagtaagtttttattaaaaagttgtgtaattatt 3670593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 238
Target Start/End: Original strand, 11150890 - 11151066
Alignment:
62 tatggagaatgctaaccagtgttctaatgacattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgta 161  Q
    |||||||||||||||||| ||  |||| | ||||||||||  |   ||||||||||||||||||| ||||| | ||||||| |||| |||  |||  |||    
11150890 tatggagaatgctaaccactgccctaagggcattggttaagcattcaaaataagtaagtttttaa-aaaaaattgtgtaatcattatttgatcaaaagta 11150988  T
162 acagcttacatttctgatacaaaatttctacttatgaattccttaaccattgtccttagggta-cggttagcaagacc 238  Q
    ||| |||| |||||| | |||||| || || || |  ||||||||| ||||| ||| |||| | ||||||| ||||||    
11150989 acatcttatatttctaagacaaaaattttatttgtagattccttaatcattgccctgagggcaccggttaggaagacc 11151066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 24334531 - 24334572
Alignment:
180 acaaaatttctacttatgaattccttaaccattgtccttagg 221  Q
    |||||||||||||| |||||||||||||||||| | ||||||    
24334531 acaaaatttctactaatgaattccttaaccattattcttagg 24334572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 32881111 - 32881160
Alignment:
93 attggttaaataactaaaataagtaagtttttaataaaaagtagtgtaat 142  Q
    |||||||||| | | |||||||||||||||||||||||| || |||||||    
32881111 attggttaaacatccaaaataagtaagtttttaataaaatgttgtgtaat 32881160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 547034 - 547114
Alignment:
67 agaatgctaaccagtgttctaatgacattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattatta 147  Q
    ||||||||||| ||||   ||||||||||| |||| || |||||| ||||| ||||| |  ||||||| ||||||||||||    
547034 agaatgctaacgagtgccataatgacattgattaagtatctaaaacaagtacgttttaatgaaaaagttgtgtaattatta 547114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 31330970 - 31331006
Alignment:
65 ggagaatgctaaccagtgttctaatgacattggttaa 101  Q
    |||||||| ||||||||||||||| ||||||||||||    
31330970 ggagaatgttaaccagtgttctaaggacattggttaa 31331006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 90 - 213
Target Start/End: Complemental strand, 33609292 - 33609169
Alignment:
90 gacattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaacagcttacatttctgatacaaaatttc 189  Q
    ||||||||||||  || |||||||| ||||||||||||||||| ||||||| |||||| |||  ||| ||||||| ||||||||||| | |  |||||||    
33609292 gacattggttaagcaattaaaataaataagtttttaataaaaaatagtgtacttattatttgatcaaatgtaacatcttacatttctaagatcaaatttc 33609193  T
190 tacttatgaattccttaaccattg 213  Q
    ||||| |||||||||||| |||||    
33609192 tacttttgaattccttaatcattg 33609169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 5525424 - 5525323
Alignment:
68 gaatgctaaccagtgttctaatgacattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaacagct 167  Q
    |||||||||| ||||| |||| | ||||||||||  |||||||||||||||||||||||||||||||||| |||| |||| |||| ||| ||||||| ||    
5525424 gaatgctaactagtgt-ctaaaggcattggttaagcaactaaaataagtaagtttttaataaaaagtagtataatcattatttggtcaaatgtaacatct 5525326  T
168 tac 170  Q
    |||    
5525325 tac 5525323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 604755 - 604853
Alignment:
114 agtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaacagcttacatttctgatacaaaatttctacttatgaattccttaaccatt 212  Q
    ||||| |||||||||||||||||| |||| |||| |||| ||| ||||||| ||||||||||  | | ||||||||||||||||  |||| ||||||||    
604755 agtaaatttttaataaaaagtagtataatcattacttggtcaaatgtaacatcttacatttccaaaagaaaatttctacttatgggttccctaaccatt 604853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 221
Target Start/End: Complemental strand, 4652179 - 4652023
Alignment:
65 ggagaatgctaaccagtgttctaatgacattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaaca 164  Q
    ||||||||||||  |||||| ||  | ||||| ||||  || |||||||||||||||||| |||||||   ||||||| |||| ||||  || |||||||    
4652179 ggagaatgctaattagtgttttagaggcattgattaagcaaataaaataagtaagttttttataaaaatatgtgtaatcattacttggttaaatgtaaca 4652080  T
165 gcttacatttctgatacaaaatttctacttatgaattccttaaccattgtccttagg 221  Q
    ||||||||||   | |||||| ||| ||||||| |||| |||| || ||||||||||    
4652079 gcttacattttcaagacaaaacttcaacttatggattctttaatcaatgtccttagg 4652023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 27896463 - 27896515
Alignment:
95 tggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattatta 147  Q
    |||||||| ||| |||||||||||||||| | |||||||| ||||||||||||    
27896463 tggttaaacaaccaaaataagtaagttttaattaaaaagttgtgtaattatta 27896515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 9021470 - 9021588
Alignment:
92 cattggttaaataactaaaataagtaagtttttaataaaaagtagtgtaattattaattgggcaattgtaacagcttacatttctgatacaaaatttcta 191  Q
    |||||||||| || | |||||||| ||||||| |  ||||| ||||||||| |||| || | |||   ||||| ||||||||||  | ||||||||||||    
9021470 cattggttaagtatccaaaataagaaagttttcacaaaaaaatagtgtaatcattatttagtcaaaaataacatcttacatttccaagacaaaatttcta 9021569  T
192 cttatgaattccttaacca 210  Q
     |||||  |||||||||||    
9021570 gttatgggttccttaacca 9021588  T

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