View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8283_low_12 (Length: 317)

Name: NF8283_low_12
Description: NF8283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8283_low_12
NF8283_low_12
[»] chr8 (1 HSPs)
chr8 (22-317)||(43103224-43103519)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 22 - 317
Target Start/End: Original strand, 43103224 - 43103519
Alignment:
Q  22 gtaaagtgcactctgaggagaggagat-agacacacgaaacgaaactatgtgtatgttagtgagagtgaggaggattgcagaaggaggtcagtgtataaa 120  Q
    ||||||||||||||||||||||||||  ||| | || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43103224 gtaaagtgcactctgaggagaggagaggagatagac-acacgaaactatgtgtatgttagtgagagtgaggaggattgcagaaggaggtcagtgtataaa 43103322  T
Q  121 tagagcaaatattgtaccgtggtccaaacctaagaagaagaaaaaagttttgacatggtgaacaagcactaaagttttaaggatctgtcaatttaatatc 220  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  43103323 tagagcaaatattgtaccgtggtccaaatctaagaagaagaaaaaagttttgacatggtaaacaagccctaaagttttaaggatctgtcaatttaatatc 43103422  T
Q  221 tcaaactttttaaatagtaaattaattccttaaattaaagaatattcataaatttaacccatccataaaaccattttaaatagagattagagactaa 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43103423 tcaaactttttaaatagtaaattaattccttaaattaaagaatattcataaatttaacccatccataaaaccattttaaatagagattagagactaa 43103519  T

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