View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8283_low_13 (Length: 317)
Name: NF8283_low_13
Description: NF8283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8283_low_13 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 38629291 - 38629607
Alignment:
| Q |
1 |
ataagaggttgaagaataatcgtggtttattaacttcggatcaaacattgcttaatagtggcttaactaggagaatggtgttaaaaaatgccagacatgc |
100 |
Q |
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| T |
38629291 |
ataagaggttgaagaataatcgtggtttattaacttcggatcaaacattgcttaatagtggcttaactaggagaatggtgttaaaaaatgctagacatgc |
38629390 |
T |
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| Q |
101 |
tgcaatctggaatgtgaagtttgccaaagccatggtgcatatgggttccttagatgtgctgacaggttctgaaggtgagattagggagcgttgtagcgtt |
200 |
Q |
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| T |
38629391 |
tgcaatctggaatgtgaagtttgccaaagccatggtgcatatgggttccttagatgtgctgacaggttctgaaggtgagattagggagcgttgtagcgtt |
38629490 |
T |
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| Q |
201 |
gttaattaattataattaactgcagcaccttcttgatcttcagataatttgttcatagattcaaagatagctttctttcttttttcatcaattctttgat |
300 |
Q |
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| T |
38629491 |
gttaattaattataattaactgcagcaccttcttgatcttcagataatttgttcatagattcaaaggtagctttctttcttttttcatcaattctttgat |
38629590 |
T |
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| Q |
301 |
acttttattgttttgtt |
317 |
Q |
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||||||||||||||||| |
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| T |
38629591 |
acttttattgttttgtt |
38629607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 38696969 - 38696763
Alignment:
| Q |
1 |
ataagaggttgaagaataatcgtggtttattaacttcggatcaaacattgcttaatagtggcttaactaggagaatggtgttaaaaaatgccagacatgc |
100 |
Q |
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| T |
38696969 |
ataagaggttgaagaataaccgtggtttattaacttcggatcaaatattggttaatagtggcttaactaagagaatggtgttaaaaaatgccagacatgc |
38696870 |
T |
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| Q |
101 |
tgcaatctggaatgtgaagtttgccaaagccatggtgcatatgggttccttagatgtgctgacaggttctgaaggtgagattagggagcgttgtagcgtt |
200 |
Q |
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| T |
38696869 |
tgcaatctggaatgtgaagtttgccaaggcaatggtacatatgggtaacttggatgtgttgacaggttctcaaggtgagattagggagtactgcagcgtt |
38696770 |
T |
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| Q |
201 |
gttaatt |
207 |
Q |
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||||||| |
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| T |
38696769 |
gttaatt |
38696763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 70 - 310
Target Start/End: Original strand, 8234649 - 8234875
Alignment:
| Q |
70 |
ggagaatggtgttaaaaaatgccagacatgctgcaat--ctggaatgtgaagtttgccaaagccatggtgcatatgggttccttagatgtgctgacaggt |
167 |
Q |
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| T |
8234649 |
ggagaatggtgttaaaaactttcagacatgctgcaatttctggaaagtaaagtttgccaaagctatggtgcatatgggtt----------gttgacaggt |
8234738 |
T |
|
| Q |
168 |
tctgaaggtgagattagggagcgttgtagcgttgttaattaattataattaactgcagcaccttcttgatcttcagataatttgttcatagattcaaaga |
267 |
Q |
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| T |
8234739 |
tctgaaggtgagagtagggagtgatgcaacgttgtcaattaatta--attaattgcagcagcttcttgatcttccgaaaatttgttcatagatgcaaata |
8234836 |
T |
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| Q |
268 |
tagctttctttcttttttcatcaattctttgatacttttattg |
310 |
Q |
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| T |
8234837 |
tag----ttttcttttttcatcaattctttgatattgttattg |
8234875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 70 - 310
Target Start/End: Complemental strand, 13404544 - 13404318
Alignment:
| Q |
70 |
ggagaatggtgttaaaaaatgccagacatgctgcaatct--ggaatgtgaagtttgccaaagccatggtgcatatgggttccttagatgtgctgacaggt |
167 |
Q |
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|||||||||||||||||| | ||||| |||||||||| |||| || |||||||||||||| |||||||||||||||| | |||||||| |
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| T |
13404544 |
ggagaatggtgttaaaaactttcagactagctgcaatctctggaaagtaaagtttgccaaagctatggtgcatatgggtt----------gttgacaggt |
13404455 |
T |
|
| Q |
168 |
tctgaaggtgagattagggagcgttgtagcgttgttaattaattataattaactgcagcaccttcttgatcttcagataatttgttcatagattcaaaga |
267 |
Q |
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||||||||||||| ||||||| | || | |||||| ||| ||||| ||||| ||||||| ||||||||||||| || ||||||||||||||| |||| | |
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| T |
13404454 |
tctgaaggtgagagtagggagtgatgcaacgttgtcaatcaatta--attaattgcagcagcttcttgatcttccgaaaatttgttcatagatgcaaata |
13404357 |
T |
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| Q |
268 |
tagctttctttcttttttcatcaattctttgatacttttattg |
310 |
Q |
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| T |
13404356 |
tag----ttttcttttttcatcaattctttgatattgttattg |
13404318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 70 - 310
Target Start/End: Complemental strand, 36981689 - 36981464
Alignment:
| Q |
70 |
ggagaatggtgttaaaaaatgccagacatgctgcaatct--ggaatgtgaagtttgccaaagccatggtgcatatgggttccttagatgtgctgacaggt |
167 |
Q |
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|||||||||||||||||||| |||||| ||| |||||| |||| || |||||||||||||||| |||||||||||||| | |||||||| |
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| T |
36981689 |
ggagaatggtgttaaaaaatttcagacacgctacaatctctggaaagtaaagtttgccaaagccaaggtgcatatgggtt----------gttgacaggt |
36981600 |
T |
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| Q |
168 |
tctgaaggtgagattagggagcgttgtagcgttgttaattaattataattaactgcagcaccttcttgatcttcagataatttgttcatagattcaaaga |
267 |
Q |
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|||||| |||||| ||||||| | || | |||||| ||| ||||| ||||| ||||||| ||||||||||||| || ||||||||||||||| |||| | |
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| T |
36981599 |
tctgaaagtgagagtagggagtgctgcaacgttgtcaatcaatta--attaattgcagcagcttcttgatcttccgaaaatttgttcatagatgcaaata |
36981502 |
T |
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| Q |
268 |
tagctttctttcttttttcatcaattctttgatacttttattg |
310 |
Q |
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||| ||| |||||||||||||||||||||| | |||||| |
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| T |
36981501 |
tag-----ttttttttttcatcaattctttgatattattattg |
36981464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 145 - 301
Target Start/End: Original strand, 32622431 - 32622581
Alignment:
| Q |
145 |
gttccttagatgtgctgacaggttctgaaggtgagattagggagcgttgtagcgttgttaattaattataattaactgcagcaccttcttgatcttcaga |
244 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||| |||| |||| |||| || ||||| ||||||| || ||||||||||||||||| | |
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| T |
32622431 |
gttccttagatgtgttgacaggttctgaaggcaagattagggagtgttgcagcgctgttgatcaatta--attaactacaacaccttcttgatcttcata |
32622528 |
T |
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| Q |
245 |
taatttgttcatagattcaaagatagctttctttcttttttcatcaattctttgata |
301 |
Q |
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| T |
32622529 |
aaatttgttcatagatgcaaagatag----ctttcatttttcatcaattctttgata |
32622581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 301
Target Start/End: Complemental strand, 39451148 - 39450924
Alignment:
| Q |
70 |
ggagaatggtgttaaaaaatgccagacatgctgcaatct---------ggaatgtgaagtttgccaaagccatggtgcatatgggttccttagatgtgct |
160 |
Q |
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| T |
39451148 |
ggagaatggtgttaaaaaattttagacatgctgcaatctctggaaagtggaaagtaaagtttgccaaagccaaggtgcatatgggtt----------gtt |
39451059 |
T |
|
| Q |
161 |
gacaggttctgaaggtgagattagggagcgttgtagcgttgttaattaattataattaactgcagcaccttcttgatcttcagataatttgttcatagat |
260 |
Q |
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|||||||||||||||||||| | ||||| | || | |||||| ||| ||||| ||||| ||||||| ||||||||||||| | | ||||||||||||| |
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| T |
39451058 |
gacaggttctgaaggtgagagtggggagtgctgcaacgttgtcaatcaatta--attaattgcagcagcttcttgatcttccaaaattttgttcatagat |
39450961 |
T |
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| Q |
261 |
tcaaagatagctttctttcttttttcatcaattctttgata |
301 |
Q |
| |
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|||| |||| |||||||||||||||||||||||||| |
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| T |
39450960 |
gcaaatatag----ttttcttttttcatcaattctttgata |
39450924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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