View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8283_low_16 (Length: 247)
Name: NF8283_low_16
Description: NF8283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8283_low_16 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 1906305 - 1906061
Alignment:
| Q |
4 |
ctgatatgaacacctgcataacagtaccaaaaatttcaaaaacatgagacacactaaaagaccgagtaaaccatcaaattagtctttgattttgtaggtc |
103 |
Q |
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|||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1906305 |
ctgagatgaacacctgcataacagtaccaaaaaattccaaaacatgagacacactaaaagaccgagtaaaccatcaaattagtctttgattttgtaggtc |
1906206 |
T |
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| Q |
104 |
gctctcaaatatgcccctgactttatgaatatttcaaaaaagtctc-gactctgtcaaatttactcgcattagtccttcaaagaatatgctaaggactat |
202 |
Q |
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| T |
1906205 |
gctctcaaatacgtccctgactttatgaatatttcaaaaaagtctctgactctgtcaaatttactcacattagtccttcaaagaatatgctaaggactac |
1906106 |
T |
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| Q |
203 |
atagttagtaagcggataaacttaagggccaaattgacaataagt |
247 |
Q |
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| T |
1906105 |
atagttagtaagcggataaacttaaggatcaaattgacagtaagt |
1906061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 66 - 239
Target Start/End: Complemental strand, 1896385 - 1896210
Alignment:
| Q |
66 |
cgagtaaaccatcaaattagtctttgattttgtaggtcgctctcaaatatgcccctgactttatgaatatttcaaaaaagtctc--gactctgtcaaatt |
163 |
Q |
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|||||||||| |||| |||| | |||||||| ||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
1896385 |
cgagtaaaccttcaagttagaccttgattttataggtcgctttcaaatacatctttgactttatgaatatttcaaaaaagtctctcgactctgttaaatt |
1896286 |
T |
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| Q |
164 |
tactcgcattagtccttcaaagaatatgctaaggactatatagttagtaagcggataaacttaagggccaaattga |
239 |
Q |
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| T |
1896285 |
tactcatattaatcctttaaagaatatgttagggactaaattgttagtaatcggataaacttagagaccaaattga |
1896210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 181
Target Start/End: Original strand, 8109289 - 8109376
Alignment:
| Q |
94 |
tttgtaggtcgctctcaaatatgcccctgactttatgaatatttcaaaaaa-gtctcgactctgtcaaatttactcgcattagtccttc |
181 |
Q |
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| T |
8109289 |
tttgtagggcgctatcaaacaggtccctgatattatgaatatttcaaaaaatgtct-gtctctatcaaatttactcatattagtccttc |
8109376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 237
Target Start/End: Original strand, 23439310 - 23439445
Alignment:
| Q |
104 |
gctctcaaatatgcccctgactttatgaatatttca--aaaaagtc-tcgactctgtcaaatttactcgcattagtccttcaaagaatatgctaaggact |
200 |
Q |
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||||||||||| | |||||||||||||||||||| |||| ||| | |||| || |||||||| | ||||||||||||||||||||||||| ||||| |
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| T |
23439310 |
gctctcaaataggtccctgactttatgaatatttttttaaaaggtcgttgactttgacaaatttaatt-cattagtccttcaaagaatatgctagggact |
23439408 |
T |
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| Q |
201 |
atatagttagtaagcggataaacttaagggccaaatt |
237 |
Q |
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| || | ||||||| ||||||||||| |||||||||| |
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| T |
23439409 |
acattgatagtaagtggataaacttaggggccaaatt |
23439445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 53797383 - 53797307
Alignment:
| Q |
67 |
gagtaaaccatcaaattagtctttgattttgtaggtcgctctcaaatatgcccctgactttatgaatatttcaaaaa |
143 |
Q |
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| T |
53797383 |
gagtaaactatcaaattaatctttgattttgtagttcactctcaaataggtcattgactttatgaatattttaaaaa |
53797307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 239
Target Start/End: Original strand, 8787360 - 8787533
Alignment:
| Q |
67 |
gagtaaaccatcaaattagtctttgattttgtaggtcgctctcaaatatgcccctgactttatgaatatttcaaaaaagtctc-gactctgtcaaattt- |
164 |
Q |
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|||||||||| |||||||||| || |||||||| ||| ||||||| | |||| ||||||||||||||| ||| ||| | |||| ||| |||||| |
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| T |
8787360 |
gagtaaaccaccaaattagtccgcgactttgtaggatgctgtcaaataggtaactgattttatgaatatttcagaaaggtccctgactttgttaaatttt |
8787459 |
T |
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| Q |
165 |
actcgcattagtccttcaaagaatatgctaaggactatatagttagtaagcggataaacttaagggccaaattga |
239 |
Q |
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| T |
8787460 |
actat-attagttcttcaaagaatatgctaaggactaaatcgatagtacgtggataaacttagggaccaaattga |
8787533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 14748416 - 14748336
Alignment:
| Q |
63 |
gaccgagtaaaccatcaaattagtctttgattttgtaggtcgctctcaaatatgcccctgactttatgaatatttcaaaaa |
143 |
Q |
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|||||||||||||| |||||||||| |||| ||| ||| | |||| ||||| | || ||||||||||||||||||||||| |
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| T |
14748416 |
gaccgagtaaaccaccaaattagtccttgacattgcaggacactcttaaataggtccttgactttatgaatatttcaaaaa |
14748336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 10028976 - 10028902
Alignment:
| Q |
67 |
gagtaaaccatcaaattagtctttgattttgtaggtcgctctcaaatatgcccctgactttatgaatatttcaaa |
141 |
Q |
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| T |
10028976 |
gagtagaccaccaaattagtctttgtctttgtaggtcactctcaaattagtctttgactttattaatatttcaaa |
10028902 |
T |
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