View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8283_low_4 (Length: 571)
Name: NF8283_low_4
Description: NF8283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8283_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 19 - 559
Target Start/End: Original strand, 53005448 - 53006005
Alignment:
| Q |
19 |
gatattggttgttatttgtgcagtatgtctgccattgcggcg--------tctgatgttttttatttattcataatgcctattatatgtttggtacttga |
110 |
Q |
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| T |
53005448 |
gatattggttgttatttgtgcagtatgtctgccattgcggcgattttcaatctgatgttttttatttattcataatgcctattatatgtttggtacttga |
53005547 |
T |
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| Q |
111 |
cattgtacatgattacacagccttattttttatctcattctttattacatacatctacactggtatcactacttcgtatcgttaagtatagctaatttcc |
210 |
Q |
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| T |
53005548 |
cattgtacatgattacacaaccttattttt-atctcattgtttattaca----tctacactggtatcactacttcgtatcgttaagtatagctaatttac |
53005642 |
T |
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| Q |
211 |
taaatctctgtgaagcgataactgacaagatattttcgttgcaacatactctattaaacgagtggaagaagcatcagattaaaaccttacactgcaactc |
310 |
Q |
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| T |
53005643 |
taaatctctgtgaagcgataactgacaagatattttcgttgcaacatactctattaaacgagtggaagaagcatcagattaaaaccttacactgcaactc |
53005742 |
T |
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| Q |
311 |
attgtatctactaaatgcttggaaactatgttaattatgcaatcagttcagcttctgttttgaagtttggtgaccgttaaaccatgtagttacagtgcac |
410 |
Q |
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| T |
53005743 |
attgtatctactaaatgcttggaaactatgttaattatgcaatcagttcagcttctgttttgaagtttggtgaccgttaaaccatgtagttacagtgcac |
53005842 |
T |
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| Q |
411 |
ataatatttgctgctaaactttgtcacttaatgctgaacaggacgctatttgacatcttagtatagtcaattgcttactg--------------atcatt |
496 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
53005843 |
atagtatttgctgctaaactttgtcacttaatgctgaacaggacgctatttgacatcttagtatagtcaattgcttactgatctctgttatgttatcatt |
53005942 |
T |
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| Q |
497 |
ccgagcaaccttctatgaacaccgtaccttattataatctcatttcttatcaatcataacttc |
559 |
Q |
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| T |
53005943 |
ccgagcaaccttctatgaacaccgtaccttattataatctcatttcttatcaatcataacttc |
53006005 |
T |
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