View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8283_low_6 (Length: 474)
Name: NF8283_low_6
Description: NF8283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8283_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 15 - 457
Target Start/End: Original strand, 43410764 - 43411236
Alignment:
| Q |
15 |
atgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcacacatcat |
114 |
Q |
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| T |
43410764 |
atgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcacacatcat |
43410863 |
T |
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| Q |
115 |
ctcacacacgtaccattagactctctctttttcaagcttcccctctcaatcttccaaacactttccgcaacagcagcagcagcagtccatcctc----ct |
210 |
Q |
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| T |
43410864 |
ctcacacacgtaccattagactctctctttttcaagcttcccctctcaatcttccaaacactttccgcaacagcagcagcagcagtccatcctcctagct |
43410963 |
T |
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| Q |
211 |
agctagcttacaacttc---tcatctgaatgtgttg------------tgtctgtctgtatattgtatagcatccaaattcccaagcaaacataacatca |
295 |
Q |
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||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43410964 |
agctagcttacaacttctgatcatctgaatgtgttgtgtctgtctgtctgtctgtctgtatattgtatagcatccaaattcccaagcaaacataacatca |
43411063 |
T |
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| Q |
296 |
atgttagctcatatacctttactgcttttcatttaattactcgttaagttagattctgcggctttattttgttaattacacatcatattgtttaattaga |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
43411064 |
atgttagctcatatacctttactgcttttcatttaattactcgttaagttagattctgcggctttattttgttaattacacatcttgttgtttaattaga |
43411163 |
T |
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| Q |
396 |
gttttagttaacaaagcatcataccaaa-----------catgtagtcttcgtgattacataaactattttgt |
457 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
43411164 |
gttttagttaacaaagcatcataccaaactgttacttctcatgtagtctttgtgattacataaactattttgt |
43411236 |
T |
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