View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8283_low_8 (Length: 403)
Name: NF8283_low_8
Description: NF8283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8283_low_8 |
 | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0108 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0897 (1 HSPs) |
| | |
|
| [»] scaffold0319 (2 HSPs) |
| | |
|
| [»] scaffold0040 (1 HSPs) |
| | |
|
| [»] scaffold0304 (2 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0107 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 10787031 - 10787425
Alignment:
| Q |
1 |
ctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10787031 |
ctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgagga |
10787130 |
T |
|
| Q |
101 |
ggcaggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagag |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10787131 |
ggcagtaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagag |
10787230 |
T |
|
| Q |
201 |
accagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
10787231 |
accagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccat |
10787330 |
T |
|
| Q |
301 |
agcattctgcaacaagccttggatggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
395 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10787331 |
agcattctgcaacaagccttggacggtaggaatgcagggctcagggtctagcatgaactgggtacacctcagaatgcagaacatgtgatgtccat |
10787425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 395
Target Start/End: Complemental strand, 14688758 - 14688368
Alignment:
| Q |
5 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
104 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||| | |||||||||||||| || || |||||||| || |||||| ||||||||| |
|
|
| T |
14688758 |
tcctcagcagggtgatagcctcgatagttgcgtctcaatccatccccgcgccagttgtgccagttgttgcagaatcgacgacggaccaaccgaggaggca |
14688659 |
T |
|
| Q |
105 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagacca |
204 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
14688658 |
gtaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcccgttatatctctgcgatagcgcgcgacgtttcttgtctccaaaagagacca |
14688559 |
T |
|
| Q |
205 |
gaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagca |
304 |
Q |
| |
|
||||||||||||||| |||||| |||| || ||| ||||| ||||||||||||||| || ||||| |||||||||||||||||||| |||||||| ||| |
|
|
| T |
14688558 |
aaaatcatgaaaaagtgtagcggtatcaggtgtgataccgtcaagcgccctcagcagcacgtcgaaatacagggcggtcacagagccagcatccatggca |
14688459 |
T |
|
| Q |
305 |
ttctgcaacaagccttggatggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
395 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||| |||||| |||||||||||||||| |
|
|
| T |
14688458 |
ttcttcaacaaaccttggatggtagggatgcagggctcagggtccagcatgaactgggtgcacctcaaaatgcagaacatgtgatgtccat |
14688368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 395
Target Start/End: Complemental strand, 7360760 - 7360370
Alignment:
| Q |
5 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
104 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||| || || |||||||| || | |||| ||||||||| |
|
|
| T |
7360760 |
tcctcagcagggtgatagcctcgatagttacgtctcaatacatccccgcgacagttgtgccagttgttgcagaatcgacgacggatcaaccgaggaggca |
7360661 |
T |
|
| Q |
105 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagacca |
204 |
Q |
| |
|
| |||||||| ||||||||||||||||| |||||| ||||||| |||||||||| ||||| ||||||||||| |||||| |||||||||||||||| | |
|
|
| T |
7360660 |
gtaatcttttataccagcctgaaacgaaacggaaagaggtgtccacgcctgttatgtctctacgatagcgcgcgacgtttcgtgtctccaaaagagacaa |
7360561 |
T |
|
| Q |
205 |
gaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagca |
304 |
Q |
| |
|
|||||||||||||||| ||||| |||| || ||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||| |
|
|
| T |
7360560 |
gaaatcatgaaaaagtgcagcggcatcaggtgtgacaccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagcatccatggca |
7360461 |
T |
|
| Q |
305 |
ttctgcaacaagccttggatggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
395 |
Q |
| |
|
|||| ||| || |||||||||||||| | |||||||||||| |||| |||||| ||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
7360460 |
ttcttcaagaaaccttggatggtagggacgcagggctcaggatccagcatgaactgggtacacctcaaaatgcagaacatgtggtgtccat |
7360370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 308
Target Start/End: Original strand, 10157805 - 10158119
Alignment:
| Q |
2 |
tcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggag |
101 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||| || || || |||| || | |||||||||||||| || || |||||||| |||| |||||| || | |
|
|
| T |
10157805 |
tcgtcctcagcaggatgaaatcctcgatagttgcgccttaacccatatccagggcagttgtgccagttgttgcagaatcgacgacgaatcaactgggggg |
10157904 |
T |
|
| Q |
102 |
g--------caggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctcc |
193 |
Q |
| |
|
| ||| || |||||||||||||||||||||||||| || ||| |||||| || |||||||| |||||||| |||||||| || || |||||| |
|
|
| T |
10157905 |
gggggggggcagcaaccttttgtaccagcctgaaacgaagcgaaagtgggagtcccctcccgttatctccctgcgataacgcgcaacattcttcgtctcc |
10158004 |
T |
|
| Q |
194 |
aaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccgg |
293 |
Q |
| |
|
||||||||||| || |||| |||||| || |||| | || ||||| ||||||||||| || |||||| ||||| || ||| |||| ||||| |
|
|
| T |
10158005 |
aaaagagaccaaaagtcattgaaaagttcagttatatcaggagagataccgtcaagcgccctcaacattacatcaaagtaaagcgcgctcacggagccat |
10158104 |
T |
|
| Q |
294 |
catccatagcattct |
308 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10158105 |
catccatagcattct |
10158119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 1729849 - 1730243
Alignment:
| Q |
1 |
ctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgagga |
100 |
Q |
| |
|
||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
1729849 |
ctcgtcctcagcaaggcgataacctcgatagttgcgtctcaatccatccccgtgacagttgtgccagttattgcaaaatcgacggcggaccaactgagga |
1729948 |
T |
|
| Q |
101 |
ggcaggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagag |
200 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
1729949 |
ggcagtaatctcttataccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaagag |
1730048 |
T |
|
| Q |
201 |
accagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
1730049 |
accagaaatcatgaaaaagtctagcggaatcaagtctgacatcgttaagcaccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccat |
1730148 |
T |
|
| Q |
301 |
agcattctgcaacaagccttggatggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
395 |
Q |
| |
|
|||||||| || ||| ||||||| ||||||||| ||||||||||||| || |||||| || |||||||||| |||||| ||||| |||||||||| |
|
|
| T |
1730149 |
agcattcttcagcaaaccttggacggtaggaatacagggctcagggtacagcatgaactgagtacacctcaaaatgcagaacatatgatgtccat |
1730243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 22338640 - 22338584
Alignment:
| Q |
251 |
gccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
307 |
Q |
| |
|
|||||||||| ||||| ||||| || ||| |||||||||| ||||||||||||||| |
|
|
| T |
22338640 |
gccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagcattc |
22338584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 5 - 395
Target Start/End: Complemental strand, 14329289 - 14328899
Alignment:
| Q |
5 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
104 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||| || || |||||||| | || |||| ||||||||| |
|
|
| T |
14329289 |
tcctcagcagggtgatagcctcgatagttgcgtctcaatccatccccgcgacagttgtgccagttgttgcagaatcgacgacaaatcaaccgaggaggca |
14329190 |
T |
|
| Q |
105 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagacca |
204 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||| | || ||||| ||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
14329189 |
gtaatcttttataccagcctgaaacgaagcggaaacgggtgtccacacccgttatgtctctgcgatagcgcgcgacgtttcgtgtctccaaaagagacca |
14329090 |
T |
|
| Q |
205 |
gaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagca |
304 |
Q |
| |
|
|||||||||||||||| |||||| |||| || ||| ||||| |||||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||| |
|
|
| T |
14329089 |
gaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagcatccatggca |
14328990 |
T |
|
| Q |
305 |
ttctgcaacaagccttggatggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
395 |
Q |
| |
|
|||| || ||| |||| ||||||||| ||||||||||||||||||| |||||| ||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
14328989 |
ttcttcagcaaaccttagatggtagggatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacatgtgatgtccat |
14328899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 18166922 - 18166544
Alignment:
| Q |
8 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
107 |
Q |
| |
|
|||||||| ||| | |||||||||||||| || | |||||| || |||| ||||||||||| || || |||||||| | || ||||| |||||||| | |
|
|
| T |
18166922 |
tcagcaggatgaaaccctcgatagttacgccttagtccatctccacgacaattgtgccagttgttgcagaatcgacgacaaattaactggggaggcagca |
18166823 |
T |
|
| Q |
108 |
atcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaac-gttttttgtctccaaaagagaccaga |
206 |
Q |
| |
|
| | |||||||||||||| |||||||||||| ||| |||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||| | |
|
|
| T |
18166822 |
accgcttgtaccagcctgagacgaagcggaaatgggagtcccctcctgttatctccctgcgataacgcgcaacatttttttgtctccaaaagagaccaaa |
18166723 |
T |
|
| Q |
207 |
aatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcatt |
306 |
Q |
| |
|
| |||| || ||| ||||| |||| | ||| ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || ||||||||||| || |
|
|
| T |
18166722 |
agtcattgaagagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcgtt |
18166623 |
T |
|
| Q |
307 |
ctgcaacaagccttggatggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatg |
385 |
Q |
| |
|
| | ||| | | || |||||||||||| |||||| |||| ||||||||| || || |||| ||||||||||||| |
|
|
| T |
18166622 |
cctaagcaaacgcttgacggtaggaatgcatggctcaacatccagcatgaattgagtgcatctcaaaatgcaaaacatg |
18166544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 395
Target Start/End: Original strand, 24954596 - 24954977
Alignment:
| Q |
5 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
104 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||| |||||||| || | ||| ||||||||| |
|
|
| T |
24954596 |
tcctcagcagggtgatagcctcgatagttgcgtctcaatccatccccgcgacagttgttgcag---------aatcgacgacggatcaatcgaggaggca |
24954686 |
T |
|
| Q |
105 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagacca |
204 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||| ||||||| |||||||||| |||| ||||| ||||| |||||| |||||||| ||||||||| |
|
|
| T |
24954687 |
gtaatcttttataccagcctgaaacgaagcggaaacaggtgtccacgcctgttatgtctcgacgatatcgcgcgacgtttcgtgtctccagaagagacca |
24954786 |
T |
|
| Q |
205 |
gaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagca |
304 |
Q |
| |
|
|||||||||||||||| |||||| |||| || ||| ||||| |||||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||| |
|
|
| T |
24954787 |
gaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagcatccatggca |
24954886 |
T |
|
| Q |
305 |
ttctgcaacaagccttggatggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
395 |
Q |
| |
|
|||| || |||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
24954887 |
ttcttcagcaagccttggatggtagggatgcaaggctcagggtccaacatgaactgggtacacctcaaaatgcagaacatgtgttgtccat |
24954977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 8 - 307
Target Start/End: Complemental strand, 23621749 - 23621449
Alignment:
| Q |
8 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggagg-cagg |
106 |
Q |
| |
|
|||||||| ||| | ||| ||||||| || || |||||||| || |||||||||||||||| || || |||||||| |||| ||||| || || ||| |
|
|
| T |
23621749 |
tcagcaggatgaaaccctagatagttgcgccttaatccatctccacgacagttgtgccagttgttgcagaatcgacgacgaattaactggggggggcagc |
23621650 |
T |
|
| Q |
107 |
aatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccaga |
206 |
Q |
| |
|
|| || |||||||||| |||||||||||||||| ||| |||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||| | |
|
|
| T |
23621649 |
aacctcttgtaccagcatgaaacgaagcggaaatgggagtcccctcctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaa |
23621550 |
T |
|
| Q |
207 |
aatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcatt |
306 |
Q |
| |
|
| ||| || ||| ||||| ||| | ||| ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || |||||||||||||| |
|
|
| T |
23621549 |
agtcaatgaagagttcagcggtgtcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcatt |
23621450 |
T |
|
| Q |
307 |
c |
307 |
Q |
| |
|
| |
|
|
| T |
23621449 |
c |
23621449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 23196144 - 23195767
Alignment:
| Q |
8 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
107 |
Q |
| |
|
|||||||| ||| | ||||||||||| || || | |||||| || |||||||||||||||| || || |||||||| |||| || || ||||||| | |
|
|
| T |
23196144 |
tcagcaggatgaaaccctcgatagttgcgccttagtccatctccacgacagttgtgccagttgttgcagaatcgacgacgaattaattggggaggcaaca |
23196045 |
T |
|
| Q |
108 |
atcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccagaa |
207 |
Q |
| |
|
| || || |||||||||| || ||||||||| ||| |||||| ||| ||||||| |||||||| |||||||| ||||||||||||||||||||||| || |
|
|
| T |
23196044 |
acctcttaaaccagcctgagacaaagcggaaatgggagtcccctcctattatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaa |
23195945 |
T |
|
| Q |
208 |
atcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
307 |
Q |
| |
|
|||| || ||| ||||| |||| | ||| ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || |||||||||| ||| |
|
|
| T |
23195944 |
gtcattgaagagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagtgttc |
23195845 |
T |
|
| Q |
308 |
tgcaacaagccttggatggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatg |
385 |
Q |
| |
|
| ||| | | || |||||||||||| |||||| ||||| ||||||||| || || |||| ||||||||||||| |
|
|
| T |
23195844 |
ctaagcaaacacttgacggtaggaatgcatggctcaacgtccagcatgaattgagtgcatctcaaaatgcaaaacatg |
23195767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 22643208 - 22643499
Alignment:
| Q |
8 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
107 |
Q |
| |
|
|||||||| ||| | ||||||||||| || || | |||||| || ||||||||||| |||| || || |||||||| |||| |||| ||||| || | |
|
|
| T |
22643208 |
tcagcaggatgaaaccctcgatagttgcgccttagtccatctccaagacagttgtgctagttgttgcagaatcgacgacgaattaacttgggaggaagca |
22643307 |
T |
|
| Q |
108 |
atcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccagaa |
207 |
Q |
| |
|
| || |||||||||||| | |||||| ||||| ||| ||||| |||||| |||| |||||||| ||||||| ||||||||||||||||||||||| || |
|
|
| T |
22643308 |
acctcttgtaccagcctaagacgaagtggaaatgggactcccctcctgttgtctccctgcgataatgcgcaacattttttgtctccaaaagagaccaaaa |
22643407 |
T |
|
| Q |
208 |
atcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccat |
300 |
Q |
| |
|
|||| || ||| ||||| ||||| ||| ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || |||||||| |
|
|
| T |
22643408 |
gtcattgaagagttcagcggtatcaa-aatgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccat |
22643499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 8 - 395
Target Start/End: Original strand, 22080854 - 22081242
Alignment:
| Q |
8 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
107 |
Q |
| |
|
|||||||| ||||| ||||||||||| || ||||||||||||||| |||||||||||||||| || || |||||||| || | ||||| |||||||| | |
|
|
| T |
22080854 |
tcagcaggatgataccctcgatagttgcgcctcaatccatccccgcgacagttgtgccagttgttgcagaatcgacgacggattaactggggaggcagta |
22080953 |
T |
|
| Q |
108 |
atcttttgtaccagcc-tgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccaga |
206 |
Q |
| |
|
|||| ||||||||||| | | ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
22080954 |
atctcttgtaccagccattagacgaagcggaaacgggtatccccgcctgttatctccctgcgatagcgcgcgacgtttcttgtctccaaaagagaccaga |
22081053 |
T |
|
| Q |
207 |
aatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcatt |
306 |
Q |
| |
|
|||||||||| ||| ||| | |||| || ||| ||| | |||||||||||||||||| |||||||| || ||||||||||| || |||||||| || || |
|
|
| T |
22081054 |
aatcatgaaagagttcagcagtatcaggtgtgataccatcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaaccagcatccatggcgtt |
22081153 |
T |
|
| Q |
307 |
ctgcaacaagccttggatggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
395 |
Q |
| |
|
|| | || |||| || |||||||||||| |||||| |||||||| ||||||||||| |||| |||||||||||| |||||||||| |
|
|
| T |
22081154 |
cttaagaaaacctttgacggtaggaatgcatggctcaatatccaacataaattgggtacatctcaaaatgcaaaacatatgatgtccat |
22081242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 41375715 - 41375532
Alignment:
| Q |
1 |
ctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgagga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
41375715 |
ctcgtcctcagcagggtgataacctcgatagttgcgtctcaatccatccccgtgacagttgtaccagttattgcaaaatcgacggcgaaccaactaagga |
41375616 |
T |
|
| Q |
101 |
ggcaggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttt |
184 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41375615 |
ggcagtaatctcttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgttt |
41375532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 209 - 395
Target Start/End: Complemental strand, 41375532 - 41375346
Alignment:
| Q |
209 |
tcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattct |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
41375532 |
tcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattct |
41375433 |
T |
|
| Q |
309 |
gcaacaagccttggatggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
395 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||| |||||| ||||| |||||||||| |
|
|
| T |
41375432 |
tcagcaagccttggacggtaggaatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacatatgatgtccat |
41375346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 22799844 - 22799785
Alignment:
| Q |
247 |
aagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcatt |
306 |
Q |
| |
|
|||||||||||||| ||||| ||||| || ||| |||||||||| |||||||||||||| |
|
|
| T |
22799844 |
aagcgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagcatt |
22799785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 8 - 389
Target Start/End: Original strand, 74318 - 74699
Alignment:
| Q |
8 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
107 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| || | |||||| || |||||||||||||||| || || |||||||| || | |||| |||||||| | |
|
|
| T |
74318 |
tcagcaggatgataccctcggtagttacgccttagtccatctccacgacagttgtgccagttgttgcagaatcgacgacggattaacttgggaggcagta |
74417 |
T |
|
| Q |
108 |
atcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccagaa |
207 |
Q |
| |
|
| || |||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| || |
|
|
| T |
74418 |
acctcttgtaccagcctgagacgaagcgaaaacgggtgtcccctcctgttatctccctgcgatagcgcgcaacatttttcgtctccaaaagagaccaaaa |
74517 |
T |
|
| Q |
208 |
atcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
307 |
Q |
| |
|
|||| || ||| ||||| |||| || ||| ||||| ||| || |||| || |||||| ||||| || ||||||||||| || ||||||||||| ||| |
|
|
| T |
74518 |
ctcattgaagagttcagcggtatcaggtgtgataccgtcaagtgctctcaccattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttc |
74617 |
T |
|
| Q |
308 |
tgcaacaagccttggatggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatgtgat |
389 |
Q |
| |
|
| | ||| | || |||||||||||| |||||| || | |||||||||||| || |||| |||||||||||| |||| |
|
|
| T |
74618 |
ttaagcaaatgcttgacggtaggaatgcatggctcaacatctagcatgaattgggtgcatctcaaaatgcaaaacatatgat |
74699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 5 - 385
Target Start/End: Original strand, 38791 - 39171
Alignment:
| Q |
5 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
104 |
Q |
| |
|
||||||||||| ||| | ||||||||||| || || | |||||| || | ||||| |||||||| || || ||||||||||||| |||||||| |||| |
|
|
| T |
38791 |
tcctcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttttgccagttgttgcagaatcgacggcgaattaactgagggggca |
38890 |
T |
|
| Q |
105 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagacca |
204 |
Q |
| |
|
| || ||||||||||||||||||| |||||||||| ||| ||| | ||| ||||||| |||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
38891 |
gcaaccttttgtaccagcctgaaatgaagcggaaatgggaatcctctcctattatctccctgcgataacgcgcaacatttttcgtctccaaaagagacca |
38990 |
T |
|
| Q |
205 |
gaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagca |
304 |
Q |
| |
|
|| |||| |||||| ||||| |||| | ||| ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || ||||||||||| |
|
|
| T |
38991 |
aaagtcattgaaaagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcg |
39090 |
T |
|
| Q |
305 |
ttctgcaacaagccttggatggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatg |
385 |
Q |
| |
|
||| | ||| | || || |||||||||||| ||||| |||||||||||||| || || |||| ||||||||||||| |
|
|
| T |
39091 |
ttcctaagcaaacgtttgacggtaggaatgcatggctcgacatccaacatgaattgagtgcatctcaaaatgcaaaacatg |
39171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 5 - 385
Target Start/End: Complemental strand, 32947 - 32567
Alignment:
| Q |
5 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
104 |
Q |
| |
|
||||||||||| ||| | ||||||||||| || || | |||||| || | ||||| |||||||| || || ||||||||||||| |||||||| |||| |
|
|
| T |
32947 |
tcctcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttttgccagttgttgcagaatcgacggcgaattaactgagggggca |
32848 |
T |
|
| Q |
105 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagacca |
204 |
Q |
| |
|
| || ||||||||||||||||||| |||||||||| ||| ||| | ||| ||||||| |||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
32847 |
gcaaccttttgtaccagcctgaaatgaagcggaaatgggaatcctctcctattatctccctgcgataacgcgcaacatttttcgtctccaaaagagacca |
32748 |
T |
|
| Q |
205 |
gaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagca |
304 |
Q |
| |
|
|| |||| |||||| ||||| |||| | ||| ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || ||||||||||| |
|
|
| T |
32747 |
aaagtcattgaaaagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcg |
32648 |
T |
|
| Q |
305 |
ttctgcaacaagccttggatggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatg |
385 |
Q |
| |
|
||| | ||| | || || |||||||||||| ||||| |||||||||||||| || || |||| ||||||||||||| |
|
|
| T |
32647 |
ttcctaagcaaacgtttgacggtaggaatgcatggctcgacatccaacatgaattgagtgcatctcaaaatgcaaaacatg |
32567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 5 - 307
Target Start/End: Complemental strand, 14562533 - 14562226
Alignment:
| Q |
5 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggagg-- |
102 |
Q |
| |
|
||||||||||| ||| | ||||||||||| || || | |||||| || | |||||||||||||| || || ||||||||||||| ||||| || || |
|
|
| T |
14562533 |
tcctcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttgtgccagttgttgcagaatcgacggcgaattaactggggggggg |
14562434 |
T |
|
| Q |
103 |
---caggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaaga |
199 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||| ||| ||||| ||| ||||||| |||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
14562433 |
gggcagcaaccttttgtaccagcctgaaacgaagcggaaatgggaatcccctcctattatctccctgcgataacgcgcaacatttttcgtctccaaaaga |
14562334 |
T |
|
| Q |
200 |
gaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatcca |
299 |
Q |
| |
|
||||| || |||| |||||| || || |||| | ||| ||||| || ||||||||||| |||||| ||||| || ||| |||||||||| || |||| |
|
|
| T |
14562333 |
gaccaaaagtcattgaaaagttcagtggcatcaggagtgataccgtcaatcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtcca |
14562234 |
T |
|
| Q |
300 |
tagcattc |
307 |
Q |
| |
|
|||||||| |
|
|
| T |
14562233 |
tagcattc |
14562226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 303
Target Start/End: Complemental strand, 13284670 - 13284372
Alignment:
| Q |
5 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
104 |
Q |
| |
|
||||||||||| ||| ||||||||||| |||||||| ||||| || | |||||||||||||| || || ||||| || |||| |||| || |||| |
|
|
| T |
13284670 |
tcctcagcaggatgaattcctcgatagttgcgtctcaacccatctccagggcagttgtgccagttgttgcagaatcggcgacgaattaactaggggggca |
13284571 |
T |
|
| Q |
105 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagacca |
204 |
Q |
| |
|
| || || ||||||||||||||||||||||| ||| || |||||| || |||||||| |||||||| || ||||| || || ||||||||||||||||| |
|
|
| T |
13284570 |
gcaacctcttgtaccagcctgaaacgaagcgaaaataggagtcccctcccgttatctccctgcgataacgagcaacattcttcgtctccaaaagagacca |
13284471 |
T |
|
| Q |
205 |
gaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagc |
303 |
Q |
| |
|
|| |||| || ||| || || |||| | ||| ||||| |||||||||||||| |||||| ||||| || ||| |||||||||| || |||||||| |
|
|
| T |
13284470 |
aaagtcattgaagagttcagtggtatcaggagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagc |
13284372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 14742016 - 14741960
Alignment:
| Q |
247 |
aagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagc |
303 |
Q |
| |
|
|||||||||||||| ||||| ||||| || ||| |||||||||| ||||||||||| |
|
|
| T |
14742016 |
aagcgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagc |
14741960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 4138 - 3761
Alignment:
| Q |
8 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
107 |
Q |
| |
|
|||||||| ||| | ||||||||||| ||||| | |||||| || |||||||||||||||| || || |||| ||| ||||| ||| | |||||||| | |
|
|
| T |
4138 |
tcagcaggatgaaaccctcgatagttgcgtcttagtccatctccacgacagttgtgccagttgttgcagaatcaacgacgaactaaccggggaggcagca |
4039 |
T |
|
| Q |
108 |
atcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccagaa |
207 |
Q |
| |
|
| || |||||||||| ||| || |||| |||| ||| ||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||| || |
|
|
| T |
4038 |
acctattgtaccagcatgagacaaagcagaaatgggaatcccctcctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaa |
3939 |
T |
|
| Q |
208 |
atcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
307 |
Q |
| |
|
|||| || ||| ||||| |||| | ||| |||| ||||| ||||||| |||||| ||||| || ||||||||||| || |||||||| || ||| |
|
|
| T |
3938 |
gtcattgaagagttcagcggtatcaggagtgatgccgtcgagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatggcgttc |
3839 |
T |
|
| Q |
308 |
tgcaacaagccttggatggtaggaatgcagggctcagggtccaacatgaattgggtacacctcagaatgcaaaacatg |
385 |
Q |
| |
|
| | || | | ||||||||||||||| |||||| |||| |||||||| || || |||| ||||||||||||| |
|
|
| T |
3838 |
ttaagcagacgcttgatggtaggaatgcatggctcaacatccagcatgaattaagtgcatctcaaaatgcaaaacatg |
3761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 5 - 306
Target Start/End: Original strand, 19284 - 19584
Alignment:
| Q |
5 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
104 |
Q |
| |
|
||||| ||||| ||| | ||||||||||| || || | |||||| || | |||||||||||||| || || |||||||| |||| ||||| || |||| |
|
|
| T |
19284 |
tcctcggcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttgtgccagttgttgcagaatcgacgacgaattaactgggg-ggca |
19382 |
T |
|
| Q |
105 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagacca |
204 |
Q |
| |
|
| || || ||||||||||||||||||||| ||||| ||| ||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
19383 |
gcaacctcttgtaccagcctgaaacgaagtggaaatgggaatcccctcctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagacca |
19482 |
T |
|
| Q |
205 |
gaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagca |
304 |
Q |
| |
|
|| |||| |||||| || || |||| | ||| ||||| || |||| |||| | |||||| ||||| || ||| |||||||||| || ||||||||| |
|
|
| T |
19483 |
aaagtcattgaaaagttcagtggcatcaggagtgataccgtcaatcgccatcagaattacatcaaagtaaagagcgctcacagagccagcgtccatagca |
19582 |
T |
|
| Q |
305 |
tt |
306 |
Q |
| |
|
|| |
|
|
| T |
19583 |
tt |
19584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 13680 - 13746
Alignment:
| Q |
241 |
accgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
307 |
Q |
| |
|
||||| || ||||||||||| |||||| ||||| || ||| |||||||||| || |||||||||||| |
|
|
| T |
13680 |
accgtcaatcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagcattc |
13746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 5 - 307
Target Start/End: Original strand, 35865 - 36167
Alignment:
| Q |
5 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
104 |
Q |
| |
|
||||||||||| ||| | ||||||||||| ||||||| ||||| | | |||||||||||||| || || ||||| || |||| ||||| || |||| |
|
|
| T |
35865 |
tcctcagcaggatgaaaccctcgatagttgcgtctcagcccatctctagggcagttgtgccagttgttgcagaatcggcgacgaattaactggggcggca |
35964 |
T |
|
| Q |
105 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagacca |
204 |
Q |
| |
|
| || || ||||||||||||||||||||||| || ||| |||||| ||||||||||| |||||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
35965 |
gcaacctcttgtaccagcctgaaacgaagcgaaagtgggagtcccctcctgttatctccctgcgataacgcgcaacattctttgtctccaaaagagacca |
36064 |
T |
|
| Q |
205 |
gaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagca |
304 |
Q |
| |
|
||| |||| || ||| || | |||| | ||| ||||| |||||||||||||| |||||| ||||| || ||| | || || || || ||||||||| |
|
|
| T |
36065 |
gaagtcattgaagagttcagtgatatcaggagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgtttacggaaccagcgtccatagca |
36164 |
T |
|
| Q |
305 |
ttc |
307 |
Q |
| |
|
||| |
|
|
| T |
36165 |
ttc |
36167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 8 - 307
Target Start/End: Complemental strand, 12574 - 12276
Alignment:
| Q |
8 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
107 |
Q |
| |
|
|||||||| ||| | ||||||||||| || || | |||||| || | |||||||||||||| || || |||||||| |||| |||| ||| ||||| | |
|
|
| T |
12574 |
tcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttgtgccagttgtttcagaatcgacgacgaattaact-agggggcagca |
12476 |
T |
|
| Q |
108 |
atcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccagaa |
207 |
Q |
| |
|
| || |||||||||||| |||| |||| |||| ||| || || ||||||||||| |||||||| |||||||| ||||||||||||||||||||||| || |
|
|
| T |
12475 |
acctcttgtaccagcctaaaacaaagcagaaatgggaatcgcctcctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaa |
12376 |
T |
|
| Q |
208 |
atcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
307 |
Q |
| |
|
|||| |||||| || || |||| | ||| | ||| |||||||||||||| ||||| ||||| || ||| |||||||||| || |||||||||||| |
|
|
| T |
12375 |
gtcattgaaaagttcagtggtatcaggagtgatatcgtcaagcgccctcagcattacatgaaagtaaagagcgctcacagagccagcgtccatagcattc |
12276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 8 - 307
Target Start/End: Complemental strand, 18325 - 18027
Alignment:
| Q |
8 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
107 |
Q |
| |
|
|||||||| ||| | ||||||||||| || || | |||||| || | |||||||||||||| || || |||||||| |||| |||| ||| ||||| | |
|
|
| T |
18325 |
tcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttgtgccagttgtttcagaatcgacgacgaattaact-agggggcagca |
18227 |
T |
|
| Q |
108 |
atcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccagaa |
207 |
Q |
| |
|
| || |||||||||||| |||| |||| |||| ||| || || ||||||||||| |||||||| |||||||| ||||||||||||||||||||||| || |
|
|
| T |
18226 |
acctcttgtaccagcctaaaacaaagcagaaatgggaatcgcctcctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaa |
18127 |
T |
|
| Q |
208 |
atcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
307 |
Q |
| |
|
|||| |||||| || || |||| | ||| | ||| |||||||||||||| ||||| ||||| || ||| |||||||||| || |||||||||||| |
|
|
| T |
18126 |
gtcattgaaaagttcagtggtatcaggagtgatatcgtcaagcgccctcagcattacatgaaagtaaagagcgctcacagagccagcgtccatagcattc |
18027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 113 - 303
Target Start/End: Original strand, 28608 - 28798
Alignment:
| Q |
113 |
ttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccagaaatcat |
212 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| |||||| ||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| || ||| |
|
|
| T |
28608 |
ttgtaccagcctgaaacgaagcgaaaatgggagtcccctcctgttatctccctgcgataacgcgcaacatttttcgtctccaaaagagaccaaaagtcaa |
28707 |
T |
|
| Q |
213 |
gaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagc |
303 |
Q |
| |
|
|| ||| || || |||| | ||| ||||| |||||||||||||| |||||| ||||| || ||| | |||||||| || |||||||| |
|
|
| T |
28708 |
tgaagagttcagtggtatcatgagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgcttacagagccagcgtccatagc |
28798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 180
Target Start/End: Complemental strand, 19030469 - 19030294
Alignment:
| Q |
5 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
104 |
Q |
| |
|
||||||||||| ||| | ||||||||||| ||||| | ||||| || | |||||||||||||| || || |||||||| |||| ||||| | |||| |
|
|
| T |
19030469 |
tcctcagcaggatgaaaccctcgatagttgcgtcttagcccatctccagggcagttgtgccagttgttgcagaatcgacgacgaattaactggaggggca |
19030370 |
T |
|
| Q |
105 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaac |
180 |
Q |
| |
|
| || || || ||||||||| |||||||||| || ||| ||||| || ||||| || |||||||| ||| |||| |
|
|
| T |
19030369 |
gcaacctcttataccagcctaaaacgaagcgaaagtgggaatcccctcccgttatttccctgcgataacgcacaac |
19030294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 9280 - 9340
Alignment:
| Q |
247 |
aagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
307 |
Q |
| |
|
|||||||||||||| | ||| ||||| || ||| |||| ||||||||||||||||||||| |
|
|
| T |
9280 |
aagcgccctcagcatgatatcaaagtagagtgcgctcacggagccggcatccatagcattc |
9340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 384862 - 384922
Alignment:
| Q |
247 |
aagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
307 |
Q |
| |
|
||||||||||| || ||||| ||||| || || |||||||||||||||||||||||||| |
|
|
| T |
384862 |
aagcgccctcaacatgacatcaaagtagagctcgctcacagagccggcatccatagcattc |
384922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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