View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8283_low_9 (Length: 396)
Name: NF8283_low_9
Description: NF8283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8283_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 34777678 - 34777290
Alignment:
| Q |
1 |
cataactgatgcaactgcaattaccattcaaaactcaaatcatccaaaacctgcactacatataccccaataagactgaacaaagcaccaatacatatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34777678 |
cataactgatgcaactgcaattaccattcaaaactcaaatcatccaaaacctgcactaaatataccccaataagactgaacaaagcaccaatacatatgg |
34777579 |
T |
|
| Q |
101 |
gcttctgatggagcacaaaaaccatcttgaagtagaaccgctactcattaacagcttctaatcaaaaccaccactctaactagcggcgagagaagtttcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34777578 |
gcttctgatggagcacaaaaaccatcttgaagtagaaccactactcattaacagcttctaatcaaaaccaccactctaactagcggcgagagaagtttcc |
34777479 |
T |
|
| Q |
201 |
accacctcgtcttgagtgagtttgacttctctccctaaatcttcccccagcctgataattaccatcttcaggccgttcagagtagtctgatttgctgtca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34777478 |
accacctcgtcttgagtgagtttgacttctctccctaaatcttcccccagcctgataattaccatcttcaggccgttcagagtagtctgatttgctgtca |
34777379 |
T |
|
| Q |
301 |
ccaacatgtggcccattagtttgatactcatgatgattatgaaagtttggaccttgtctttcccggttaccagattggttatgatgatg |
389 |
Q |
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| T |
34777378 |
ccaacatgtggcccattagtttgatactcatgatgattatgaaagtttggaccttgtctttcccggttaccagattggttatgatgatg |
34777290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 103 - 303
Target Start/End: Complemental strand, 34791009 - 34790802
Alignment:
| Q |
103 |
ttctgatggagcacaaaaaccatcttgaagtagaaccgctactcattaacagcttctaatcaaaaccaccact-------ctaactagcggcgagagaag |
195 |
Q |
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||||| ||||||| | ||||||| | | | || |||| |||| |||||||||||||||||| ||||||||||| ||| |||| | ||||||||| |
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| T |
34791009 |
ttctggtggagcatataaaccatgtaggaatataaccactacccattaacagcttctaatcgaaaccaccactatagctactagctagtgccgagagaag |
34790910 |
T |
|
| Q |
196 |
tttccaccacctcgtcttgagtgagtttgacttctctccctaaatcttcccccagcctgataattaccatcttcaggccgttcagagtagtctgatttgc |
295 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||||| ||||||||||| |
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| T |
34790909 |
tttccaccacctcgtcttgagtgcgtttgacccctctccctaaatcttcccccagcatgatagttaccatctttaggtcgttcagagttgtctgatttgc |
34790810 |
T |
|
| Q |
296 |
tgtcacca |
303 |
Q |
| |
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|||||||| |
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| T |
34790809 |
tgtcacca |
34790802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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