View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8284_high_11 (Length: 287)
Name: NF8284_high_11
Description: NF8284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8284_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 129 - 250
Target Start/End: Original strand, 33739647 - 33739768
Alignment:
| Q |
129 |
gagttcatttgagaccatttactggtgttgaaatagcaagtccaggccaagagaaacaatcaccagcaccaacaaaaccaccttcaccaccttctaactg |
228 |
Q |
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| T |
33739647 |
gagttcatttgagaccatttactggtgttgaaatagcaagtccaggccaagagaaacaatcaccagcaccaacaaaaccaccttcaccaccttctaactg |
33739746 |
T |
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| Q |
229 |
ccacgtgtttccaacaacacca |
250 |
Q |
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| T |
33739747 |
ccacgtgtttccaacaacacca |
33739768 |
T |
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Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 33739527 - 33739588
Alignment:
| Q |
18 |
atacccaaattccattacacaccaaaacctaaacttgaactaacataacagtaccctccatg |
79 |
Q |
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| T |
33739527 |
atacccaaattccattacacaccaaaacctaaacttgaactaacataacagtaccctccatg |
33739588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 252 - 287
Target Start/End: Original strand, 36448356 - 36448391
Alignment:
| Q |
252 |
actcgaaataatatccgacccagtcatcctctcttc |
287 |
Q |
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| T |
36448356 |
actcgaaataatgtccgacccagtcatcctctcttc |
36448391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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