View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8284_high_2 (Length: 517)

Name: NF8284_high_2
Description: NF8284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8284_high_2
NF8284_high_2
[»] chr1 (4 HSPs)
chr1 (1-511)||(45593938-45594451)
chr1 (126-176)||(32447481-32447531)
chr1 (121-159)||(49848563-49848601)
chr1 (123-159)||(27632581-27632617)
[»] chr7 (1 HSPs)
chr7 (96-179)||(28944875-28944958)
[»] chr5 (1 HSPs)
chr5 (95-176)||(1318453-1318534)
[»] chr4 (8 HSPs)
chr4 (107-163)||(21174556-21174612)
chr4 (108-163)||(31941907-31941962)
chr4 (95-176)||(30007774-30007855)
chr4 (108-163)||(32000866-32000921)
chr4 (120-163)||(36246538-36246581)
chr4 (121-163)||(27808566-27808608)
chr4 (118-151)||(23344797-23344830)
chr4 (107-163)||(40254009-40254065)
[»] chr8 (2 HSPs)
chr8 (126-163)||(39916909-39916946)
chr8 (115-179)||(11747423-11747487)
[»] chr2 (2 HSPs)
chr2 (95-163)||(37881325-37881393)
chr2 (121-171)||(13344898-13344948)


Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 45594451 - 45593938
Alignment:
Q  1 ggtacctcatcttagtcctaaaggttcatt---cactcgtaacttgcttagtacattcactttgcatgtaactgataactatgcaatctttcttttctag 97  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45594451 ggtacctcatcttagtcctaaaggttcattattcactcgtaacttgcttagtacattcactttgcatgtaactgataactatgcaatctttcttttctag 45594352  T
Q  98 gtgggctgctatagcagctcaactaccaggaagaacagacaatgagattaagaactattggaacacccatttaaagaaacgtgtccggcagtcactaggg 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45594351 gtgggctgctatagcagctcaactaccaggaagaacagacaatgagattaagaactattggaacacccatttaaagaaacgtgtccggcagtcactaggg 45594252  T
Q  198 gaaaaacatccatgtctccttcctgataggaatgtccagtctaattctccttctacacgccacatggtccagtgggaaagtgcaagggttgaagcagaga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45594251 gaaaaacatccatgtctccttcctgataggaatgtccagtctaattctccttctacacgccacatggtccagtgggaaagtgcaagggttgaagcagaga 45594152  T
Q  298 cgaggctgtcgttggagtccactttgcttaattcaggctctacgactaaaacataccctgattactttcttcaactttggcattctgatgttggagagaa 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  45594151 cgaggctgtcgttggagtccactttgcttaattcaggctctacgactaaaacataccctgattactttcttcaactttggcattctgatgttggagacaa 45594052  T
Q  398 atttcgtgcaggagtagtgtgtcaaagcatcgtctcattggaggaatcatgttcagatgtctcattgcaggtgaaaaacaacggaacacaaagcctgaaa 497  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45594051 attccgtgcaggagtagtgtgtcaaagcatcgtctcattggaggaatcatgttcagatgtctcattgcaggtgaaaaacaaccgaacacaaagcctgaaa 45593952  T
Q  498 gtgtcaacaccaaa 511  Q
    ||||||||||||||    
T  45593951 gtgtcaacaccaaa 45593938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 32447531 - 32447481
Alignment:
Q  126 ggaagaacagacaatgagattaagaactattggaacacccatttaaagaaa 176  Q
    |||||||||||||||||||| |||||||||||||  || ||||| ||||||    
T  32447531 ggaagaacagacaatgagataaagaactattggaggactcatttcaagaaa 32447481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 159
Target Start/End: Complemental strand, 49848601 - 49848563
Alignment:
Q  121 taccaggaagaacagacaatgagattaagaactattgga 159  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  49848601 taccaggaagaacagataatgagataaagaactattgga 49848563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 27632617 - 27632581
Alignment:
Q  123 ccaggaagaacagacaatgagattaagaactattgga 159  Q
    |||||||||||||||||||| || |||||||||||||    
T  27632617 ccaggaagaacagacaatgaaatcaagaactattgga 27632581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 28944958 - 28944875
Alignment:
Q  96 aggtgggctgctatagcagctcaactaccaggaagaacagacaatgagattaagaactattggaacacccatttaaagaaacgt 179  Q
    |||||||||||||| ||| | ||  |||| |||||||||||||||||||| ||||||| ||||||||| ||||| |||||||||    
T  28944958 aggtgggctgctattgcatcccagttacccggaagaacagacaatgagataaagaacttttggaacacacatttgaagaaacgt 28944875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 1318534 - 1318453
Alignment:
Q  95 taggtgggctgctatagcagctcaactaccaggaagaacagacaatgagattaagaactattggaacacccatttaaagaaa 176  Q
    ||||||||| ||||||||| | || || |||||||| ||||| |||||||| ||||| | ||||||||| ||||||||||||    
T  1318534 taggtgggcagctatagcaacacatcttccaggaaggacagataatgagataaagaatttttggaacacacatttaaagaaa 1318453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 21174556 - 21174612
Alignment:
Q  107 tatagcagctcaactaccaggaagaacagacaatgagattaagaactattggaacac 163  Q
    ||||||||||||| ||||||| || ||||||||||| || |||||||||||||||||    
T  21174556 tatagcagctcaattaccaggtaggacagacaatgatatcaagaactattggaacac 21174612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 31941907 - 31941962
Alignment:
Q  108 atagcagctcaactaccaggaagaacagacaatgagattaagaactattggaacac 163  Q
    |||||||||||||| ||| |||||||||||||||| || |||||||| ||||||||    
T  31941907 atagcagctcaacttccaagaagaacagacaatgaaatcaagaactactggaacac 31941962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 30007774 - 30007855
Alignment:
Q  95 taggtgggctgctatagcagctcaactaccaggaagaacagacaatgagattaagaactattggaacacccatttaaagaaa 176  Q
    ||||||| | |||||||||| ||| ||||||||||| || || ||||| || ||||| | ||||||||| ||||||||||||    
T  30007774 taggtggtcagctatagcaggtcatctaccaggaaggactgataatgaaataaagaatttttggaacactcatttaaagaaa 30007855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 32000866 - 32000921
Alignment:
Q  108 atagcagctcaactaccaggaagaacagacaatgagattaagaactattggaacac 163  Q
    |||||||| ||||| ||| |||||||||||||||| || |||||||| ||||||||    
T  32000866 atagcagcacaacttccaagaagaacagacaatgaaatcaagaactactggaacac 32000921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 36246538 - 36246581
Alignment:
Q  120 ctaccaggaagaacagacaatgagattaagaactattggaacac 163  Q
    ||||||||||||||||||||||| || ||||| |||||||||||    
T  36246538 ctaccaggaagaacagacaatgaaatcaagaattattggaacac 36246581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 27808566 - 27808608
Alignment:
Q  121 taccaggaagaacagacaatgagattaagaactattggaacac 163  Q
    |||||||||||||||| |||||||| ||||| |||||||||||    
T  27808566 taccaggaagaacagataatgagataaagaattattggaacac 27808608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 23344830 - 23344797
Alignment:
Q  118 aactaccaggaagaacagacaatgagattaagaa 151  Q
    ||||||| ||||||||||||||||||||||||||    
T  23344830 aactacctggaagaacagacaatgagattaagaa 23344797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 40254065 - 40254009
Alignment:
Q  107 tatagcagctcaactaccaggaagaacagacaatgagattaagaactattggaacac 163  Q
    ||||||||| ||| |||||||| |||| || ||||| || |||||||||||||||||    
T  40254065 tatagcagcgcaattaccaggacgaacggataatgatataaagaactattggaacac 40254009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 39916909 - 39916946
Alignment:
Q  126 ggaagaacagacaatgagattaagaactattggaacac 163  Q
    |||||||||||||||||||| |||||||||||||||||    
T  39916909 ggaagaacagacaatgagatcaagaactattggaacac 39916946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 11747423 - 11747487
Alignment:
Q  115 ctcaactaccaggaagaacagacaatgagattaagaactattggaacacccatttaaagaaacgt 179  Q
    |||| |||||||||||||| ||||||||||| ||||| |  |||||||| || ||||||||||||    
T  11747423 ctcagctaccaggaagaactgacaatgagatcaagaatttatggaacacacacttaaagaaacgt 11747487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 37881393 - 37881325
Alignment:
Q  95 taggtgggctgctatagcagctcaactaccaggaagaacagacaatgagattaagaactattggaacac 163  Q
    ||||||| |||||||||| |||  | |||| ||||||||||||||||| || |||||||| ||||||||    
T  37881393 taggtggtctgctatagctgctagattacccggaagaacagacaatgaaataaagaactactggaacac 37881325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 13344898 - 13344948
Alignment:
Q  121 taccaggaagaacagacaatgagattaagaactattggaacacccatttaa 171  Q
    |||||||| ||||||| |||||||| ||||||||||||||| | |||||||    
T  13344898 taccaggacgaacagataatgagataaagaactattggaactctcatttaa 13344948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University