View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8284_high_9 (Length: 315)
Name: NF8284_high_9
Description: NF8284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8284_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 156 - 295
Target Start/End: Complemental strand, 5565403 - 5565264
Alignment:
| Q |
156 |
atcaatgaatgattcagtattagaaatgaggaatacaaaaactgaaaataacaattaacgttgcaaaataaaagaagcttctgacagcgaccccgacgcg |
255 |
Q |
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| T |
5565403 |
atcaatgaatgattcagtattagaaatgaggaatacaaaagcagaaaataacaattaaccttgcaaaataaaagaagcttctgacagtgacatcgacacg |
5565304 |
T |
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| Q |
256 |
ttgaagagcgaattccaacgcggtgatcaacaacggtggt |
295 |
Q |
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| T |
5565303 |
gtgaagagcgaattccgacgcagtggtcaacgacggtggt |
5565264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 13539618 - 13539565
Alignment:
| Q |
210 |
ttaacgttgcaaaataaaagaagcttctgacagcgaccccgacgcgttgaagag |
263 |
Q |
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| T |
13539618 |
ttaaccttgcaaaataaaagaagcttctgacagcaaacccgacgcgatgaagag |
13539565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 31896518 - 31896584
Alignment:
| Q |
228 |
agaagcttctgacagcgaccccgacgcgttgaagagcgaattccaacgcggtgatcaacaacggtggt |
295 |
Q |
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| T |
31896518 |
agaagcttctaacagcgacactgacgcgatgaagagcgaa-tccgacgcggtgattaacaagggtggt |
31896584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 274782 - 274714
Alignment:
| Q |
43 |
aaatgaatgattagaagatatacctcatcaccaggcaaggtgctcgcaccagtaatggtgatatcttgt |
111 |
Q |
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| T |
274782 |
aaatgaatgattggaagatatacctcatcaccaggcaaggtgctggcaccagtaatggtaatatcttgt |
274714 |
T |
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