View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8284_low_1 (Length: 733)
Name: NF8284_low_1
Description: NF8284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8284_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 1 - 716
Target Start/End: Original strand, 26792067 - 26792777
Alignment:
| Q |
1 |
tcagcctcctagctcctacactttcaatgaaaatagtagctataaggagctttcagaaattgcagatctagccaggaaacgtgccgaaattgcaaggtaa |
100 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26792067 |
tcagccttctagctcctacactttcaatgaaaatagtagctataaggagctttcagaaattgcagatctagccaggaaacgtgccgaaattgcaaggtaa |
26792166 |
T |
|
| Q |
101 |
gccacttgaatggttgnnnnnnngtggaaattattatttttgaagagtaatgaattatgtatcacaaacacttatgagtgaaagtgtcgtatcagagtct |
200 |
Q |
| |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26792167 |
gccacttgaatggttgaaaaaaagtggaaattattatt---gaagagtaatgaattatgtatcacaaacacttatgagtgaaagtgtcgtatcagagtct |
26792263 |
T |
|
| Q |
201 |
acgtgtcagtgtcgtatctaatgtttgtatgtg--cgactgattcatagttaatgaatggatgtgttacaggcttatggagaagaatactctaaagggcc |
298 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26792264 |
acgtgtcagtgtcgtatctaatgtttgtatgtgtgcgactgattcatagttaatgaatggatgtgttacaggcttatggagaagaatactctaaagggcc |
26792363 |
T |
|
| Q |
299 |
gtgttgagtcagtggtgaagctgaagggacttgacattgagacaattaagcagaattatacaatataggaaaagcttgaacaatcttcaagaattggtcc |
398 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26792364 |
gtgttgagtcagtggtgaagctc---ggacttgacattgagacaattaagcagaattatacaatataggaaaagcttgaacaatcttcaagaattggtcc |
26792460 |
T |
|
| Q |
399 |
aatgtttatgacgaagaaagactcaaaagaccttagctattttgattctcttttattttgtatagcagcatatagttcgttattttctgttacttttcta |
498 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26792461 |
aatgtttatgacgaagaaagactcaaa-gaccttagctattttgattctcttttattttgtatagcagcatatagtttgttattttctgttacttttcta |
26792559 |
T |
|
| Q |
499 |
atgggtgttagttgtttctctttagattaagcnnnnnnnagataatcaaactctataatactaagagttaaaccaatagaatttgtctatttagattagc |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
26792560 |
atgggtgttagttgtttctctttagattaagctttttttagataatcaaactctataatgctaagagttaaaccaatagaatttgtctatttagattaac |
26792659 |
T |
|
| Q |
599 |
tttttcgtttttatattgaaaatttacagcattgagttgttaacatataagatctttacatttttagatttcctatatcaaaccttgttttttcattgtc |
698 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26792660 |
tttttcgtttttatattgaaaatttacagcattaagttgttaacatataagatctttacatttttagatttcctatatcaaaccttgttttttcattgtc |
26792759 |
T |
|
| Q |
699 |
tttccatctccacctagt |
716 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
26792760 |
tttccatctccacctagt |
26792777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 9e-29; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 190 - 401
Target Start/End: Original strand, 1464609 - 1464812
Alignment:
| Q |
190 |
tatcagagtctacgtgtcagtgtcgtatctaatgtttgtatgtgcgactgattcatagttaatgaatggatgtgttacaggcttatggagaagaatactc |
289 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||| || ||||||||||||| ||| ||||| ||||| ||||||||||||| |||||||| |
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| T |
1464609 |
tatcagagtctacgtgttagtgtcgtatgtaatgttt--atttgcgactgattca------atgtatggacgtgtttcaggcttatggagcggaatactc |
1464700 |
T |
|
| Q |
290 |
taaagggccgtgttgagtcagtggtgaagctgaagggacttgacattgagacaattaagcagaattatacaatataggaaaagcttgaacaatcttcaag |
389 |
Q |
| |
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| ||||| ||||||||||| || |||||||||||||| || |||||||| ||| |||| |||||| |||| |||| |||| || |||||||| ||| |
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| T |
1464701 |
ttaagggtcgtgttgagtcggtagtgaagctgaagggcctcgacattgacacacttaatactaattattcaatttaggcaaaggctgcacaatcttgaag |
1464800 |
T |
|
| Q |
390 |
aattggtccaat |
401 |
Q |
| |
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||||||| |||| |
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|
| T |
1464801 |
aattggttcaat |
1464812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 1464355 - 1464470
Alignment:
| Q |
1 |
tcagcctcctagctcctacactttcaatgaaaatagtagctataaggagctttcagaaattgcagatctagccaggaaacgtgccgaaattgcaaggtaa |
100 |
Q |
| |
|
||||||||||| |||| ||||| ||||||| ||||||||||| ||||||||||||| |||||||| | ||||| ||||||||| ||||| ||||||||| |
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| T |
1464355 |
tcagcctcctacctccaacactatcaatgagtatagtagctatgaggagctttcagagattgcagagcaagccaagaaacgtgctgaaatggcaaggtaa |
1464454 |
T |
|
| Q |
101 |
gccacttgaatggttg |
116 |
Q |
| |
|
|||| ||||||||||| |
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|
| T |
1464455 |
gccaattgaatggttg |
1464470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 600 - 706
Target Start/End: Original strand, 1465022 - 1465124
Alignment:
| Q |
600 |
ttttcgtttttatattgaaaatttacagcattgagttgttaacatataagatctttacatttttagatttcctatatcaaaccttgttttttcattgtct |
699 |
Q |
| |
|
||||||||||||||||||||||| | || || ||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||| ||||| |
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|
| T |
1465022 |
ttttcgtttttatattgaaaattaataggatcaagttgttaacata--agatctttacatttt-agattttctatatcaaaccttgttttttca-tgtct |
1465117 |
T |
|
| Q |
700 |
ttccatc |
706 |
Q |
| |
|
||||||| |
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| T |
1465118 |
ttccatc |
1465124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 1491765 - 1491858
Alignment:
| Q |
22 |
tttcaatgaaaatagtagctataaggagctttcagaaattgcagatctagccaggaaacgtgccgaaattgcaaggtaagccacttgaatggtt |
115 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| |||||||| | || || ||||| ||| ||| ||||||| ||| ||| || ||||||| |
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| T |
1491765 |
tttcaatgaaaatagtagctatagggagctttcagagattgcagagcaagacaagaaacatgctgaagttgcaagttaatccatttaaatggtt |
1491858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 244 - 393
Target Start/End: Complemental strand, 1490210 - 1490066
Alignment:
| Q |
244 |
atagttaatgaatggatgtgttacaggcttatggagaagaatactctaaagggccgtgttgagtcagtggtgaagctgaagggacttgacattgagacaa |
343 |
Q |
| |
|
||||||||||||||| ||||||||| ||| |||||| ||| ||| ||||||| || ||||||| | |||||| | ||||||||| ||||||| |||| |
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|
| T |
1490210 |
atagttaatgaatggttgtgttacatgctgatggag-ggaacactataaagggacgcgttgagttggcggtgaaaccgaagggact--acattgacacaa |
1490114 |
T |
|
| Q |
344 |
ttaagcagaattatacaatataggaaaagcttgaacaatcttcaagaatt |
393 |
Q |
| |
|
||| ||||||||||| ||| | || | ||||| |||||||||||||||| |
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|
| T |
1490113 |
ttatgcagaattatataattt--gagaggcttggacaatcttcaagaatt |
1490066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 351
Target Start/End: Complemental strand, 1495255 - 1495188
Alignment:
| Q |
284 |
atactctaaagggccgtgttgagtcagtggtgaagctgaagggacttgacattgagacaattaagcag |
351 |
Q |
| |
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||||||| ||||| | ||| || ||||||||||||||||||||||| || ||||| |||||| ||||| |
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| T |
1495255 |
atactctcaagggacatgtagaatcagtggtgaagctgaagggactagatattgatacaattcagcag |
1495188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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