View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8284_low_13 (Length: 281)
Name: NF8284_low_13
Description: NF8284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8284_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 47687864 - 47688126
Alignment:
| Q |
1 |
gaaatgtcggaaatgctttgggnnnnnnnaaccatccattcttttagaatctaaaatgtcaatatataaggcgataaagaatgaattttgatttcttaac |
100 |
Q |
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| T |
47687864 |
gaaatgtcggaaatgctttgggtttttttaaccatccattcttttagaatctaaaatgtcaatatataaggccataaagaatgaattttgatttcttaac |
47687963 |
T |
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| Q |
101 |
tatccatgatctttatagataagaaataaaatgtcaattagactaaaaaggagttttgattgcttataactatatattatctttatgaatagaaactaaa |
200 |
Q |
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| T |
47687964 |
tatccatgatctttatagataagaaataaaatgtcaattagactaaaaaggagttttgattgcttataactatatattatctttatgaatagaaactaaa |
47688063 |
T |
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| Q |
201 |
atgtcagctaagcaatggaaaatgaattttgatcacttaactatttatgttctaaatggatac |
263 |
Q |
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| T |
47688064 |
atgtcagctaagcaatggaaaatgaattttgatcacttaactatttatgttctaaatggatac |
47688126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 36346927 - 36346887
Alignment:
| Q |
76 |
aaagaatgaattttgatttcttaactatccatgatctttat |
116 |
Q |
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| T |
36346927 |
aaagaatgaattttgattgcttaactattcattatctttat |
36346887 |
T |
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